Factsheet for VIT_11s0016g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60203	Soybean	cytosol, mitochondrion	60.23	72.78
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	66.21	71.64
KRH41488	Soybean	cytosol, mitochondrion	70.8	70.64
KRH74242	Soybean	cytosol, mitochondrion	65.75	68.1
Solyc12g008520.1.1	Tomato	cytosol	59.31	63.08
PGSC0003DMT400000953	Potato	cytosol	50.57	60.44
GSMUA_Achr6P14870_001	Banana	cytosol, mitochondrion	50.8	58.93
KRH48992	Soybean	endoplasmic reticulum	43.91	56.51
GSMUA_Achr10P...	Banana	cytosol	55.63	54.88
GSMUA_Achr3P17570_001	Banana	cytosol, mitochondrion	50.8	54.7
GSMUA_AchrUn_...	Banana	cytosol	46.44	53.3
GSMUA_Achr5P06520_001	Banana	cytosol, mitochondrion	49.66	53.2
Bra024161.1-P	Field mustard	mitochondrion	45.75	51.29
CDY30233	Canola	mitochondrion	45.75	51.29
AT4G29150.1	Thale cress	mitochondrion	46.9	51.13
TraesCS1B01G142100.1	Wheat	cytosol	53.33	51.1
Os05t0187500-01	Rice	cytosol	54.94	50.85
TraesCS1A01G122900.1	Wheat	cytosol, plastid	52.87	50.66
TraesCS1D01G123800.1	Wheat	cytosol	52.87	50.66
CDY47784	Canola	mitochondrion	45.06	50.52
GSMUA_Achr7P13670_001	Banana	cytosol, mitochondrion	43.45	50.13
Os01t0190500-01	Rice	cytosol, mitochondrion	53.1	49.68
Zm00001d037688_P001	Maize	mitochondrion	51.26	48.27
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	40.92	48.24
Zm00001d010366_P001	Maize	cytosol, mitochondrion	51.26	47.55
GSMUA_Achr8P20170_001	Banana	cytosol, mitochondrion	43.68	47.5
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	49.66	46.85
TraesCS3B01G127100.1	Wheat	cytosol	49.2	46.22
KXG21487	Sorghum	cytosol, mitochondrion	52.18	46.04
EES02320	Sorghum	mitochondrion	50.8	46.04
TraesCS3A01G108100.1	Wheat	cytosol, mitochondrion	49.2	45.82
Zm00001d008819_P001	Maize	mitochondrion	47.82	44.64
Zm00001d039510_P001	Maize	cytosol, mitochondrion	48.28	43.66
HORVU1Hr1G028250.6	Barley	mitochondrion	52.18	43.07
HORVU3Hr1G019630.3	Barley	endoplasmic reticulum, plastid	48.97	37.17
VIT_00s0684g00020.t01	Wine grape	mitochondrion	10.34	32.85
VIT_02s0025g04120.t01	Wine grape	mitochondrion	37.24	32.79
VIT_05s0020g03980.t01	Wine grape	cytosol	34.25	32.11
VIT_08s0007g05960.t01	Wine grape	cytosol	26.21	26.82
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	28.05	26.01
VIT_16s0100g00620.t01	Wine grape	cytosol	19.77	25.83
VIT_14s0030g01880.t01	Wine grape	nucleus	22.99	25.58
VIT_08s0007g05980.t01	Wine grape	cytosol	24.14	23.23
VIT_14s0108g00150.t01	Wine grape	nucleus	24.14	18.17
VIT_01s0026g01790.t01	Wine grape	cytosol	24.14	18.17
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	23.22	16.21
VIT_18s0001g13870.t01	Wine grape	nucleus	24.37	13.38

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100245766	MapMan:35.2	ProteinID:CBI27990	ProteinID:CBI27990.3	UniProt:D7TBF5
InterPro:DUF4005	EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF10
SMART:SM00015	UniParc:UPI00015C8E36	ArrayExpress:VIT_11s0016g03030	EnsemblPlantsGene:VIT_11s0016g03030	EnsemblPlants:VIT_11s0016g03030.t01	unigene:Vvi.22389
RefSeq:XP_010656256.1	RefSeq:XP_010656257.1	RefSeq:XP_010656258.1	RefSeq:XP_010656259.1	RefSeq:XP_010656260.1	RefSeq:XP_010656261.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:2439159..2441045

Molecular Weight (calculated)

48577.5 Da

IEP (calculated)

11.028

GRAVY (calculated)

-0.737

Length

435 amino acids

Sequence
(BLAST)

001: MGRATRWFKG LFGLKRDKEH KDNSNPGDRK DKSRWSSGHS GRDSVGLCHN PTTIPPNISA AEAAWLRSYY TDTENEQNKH AIAVAAATAA AADAAVAAAQ
101: AAVAVVRLTS HGRGTMFGGG RERWGAVKIQ TVFRGYLARK ALRALKGLVK LQALVRGYLV RKQATATLHG MQALIRAQAT VRAQKARELI SNEKRFEIQT
201: RKSMERFDES RSEHTASIHS RRLSASLDTT FNAIDGSPKI VEVDTGRPKS RSRRTNTSVS DSGDDQHYQT LSSPLPCRTP IPVPVRLSTP DHRNYQDSDW
301: GLTGDECRFS TAQSTPRFMN SERSNVPITP AKTVCADSFF RQYTNFPNYM ANTQSFKAKL RSHSAPKQRP EPGPKKRLSL NEMMESRSSL SGVKMQRSCS
401: RVQEAINFKN AVMGKLERPS EIVREAERCN LQRRW

Best Arabidopsis Sequence Match ( AT3G16490.1 )
(BLAST)

001: MGRAARWFKG IFGMKKSKEK ENCVSGDVGG EAGGSNIHRK VLQADSVWLR TYLAETDKEQ NKHAIAVAAA TAAAADAAVA AAQAAVAVVR LTSNGRSGGY
101: SGNAMERWAA VKIQSVFKGY LARKALRALK GLVKLQALVR GYLVRKRAAE TLHSMQALIR AQTSVRSQRI NRNNMFHPRH SLERLDDSRS EIHSKRISIS
201: VEKQSNHNNN AYDETSPKIV EIDTYKTKSR SKRMNVAVSE CGDDFIYQAK DFEWSFPGEK CKFPTAQNTP RFSSSMANNN YYYTPPSPAK SVCRDACFRP
301: SYPGLMTPSY MANTQSFKAK VRSHSAPRQR PDRKRLSLDE IMAARSSVSG VRMVQPQPQP QTQTQQQKRS PCSYDHQFRQ NETDFRFYN

Arabidopsis Description

IQD26At3g16490 [Source:UniProtKB/TrEMBL;Acc:Q9LK76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.