Factsheet for VIT_05s0020g03980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35475	Soybean	cytosol	67.03	66.31
KRG91354	Soybean	cytosol, plastid	65.09	64.53
GSMUA_Achr8P26800_001	Banana	cytosol	51.08	63.37
GSMUA_Achr3P14930_001	Banana	cytosol	51.51	63.06
KRH69109	Soybean	nucleus	53.02	58.99
KRH31669	Soybean	cytosol, mitochondrion	52.59	57.68
Os03t0636700-00	Rice	mitochondrion	44.4	46.09
Zm00001d033280_P001	Maize	cytosol, mitochondrion	45.04	44.19
TraesCS5B01G381100.1	Wheat	cytosol, mitochondrion	43.75	43.94
TraesCS5D01G387500.1	Wheat	cytosol	43.53	43.63
TraesCS5A01G377500.1	Wheat	cytosol	43.32	43.51
EER93770	Sorghum	cytosol, mitochondrion	45.26	42.86
HORVU5Hr1G093430.4	Barley	cytosol	42.89	42.52
TraesCSU01G074100.1	Wheat	cytosol, mitochondrion	32.54	37.94
TraesCS5A01G055100.1	Wheat	cytosol, mitochondrion	31.68	36.57
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	31.25	36.07
Zm00001d041437_P001	Maize	cytosol, mitochondrion	33.41	34.99
Os12t0604500-00	Rice	cytosol	33.19	34.53
VIT_00s0684g00020.t01	Wine grape	mitochondrion	10.13	34.31
VIT_11s0016g03030.t01	Wine grape	cytosol	32.11	34.25
VIT_14s0030g01880.t01	Wine grape	nucleus	28.02	33.25
VIT_02s0025g04120.t01	Wine grape	mitochondrion	35.34	33.2
OQU79535	Sorghum	cytosol, mitochondrion	32.33	32.4
VIT_16s0100g00620.t01	Wine grape	cytosol	20.26	28.23
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	28.02	27.72
VIT_08s0007g05960.t01	Wine grape	cytosol	25.0	27.29
VIT_08s0007g05980.t01	Wine grape	cytosol	24.35	25.0
VIT_01s0026g01790.t01	Wine grape	cytosol	24.35	19.55
VIT_14s0108g00150.t01	Wine grape	nucleus	24.35	19.55
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	22.84	17.01
VIT_18s0001g13870.t01	Wine grape	nucleus	20.47	11.99

Protein Annotations

EntrezGene:100244856	wikigene:100244856	MapMan:35.2	EMBL:AM427254	ProteinID:CAN66770	ProteinID:CAN66770.1
ProteinID:CCB50455	ProteinID:CCB50455.1	InterPro:DUF4005	UniProt:F6HDT4	EMBL:FN595749	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100244856	wikigene:LOC100244856
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF45	SMART:SM00015
TIGR:TC56323	TMHMM:TMhelix	UniParc:UPI0001985DAB	ArrayExpress:VIT_05s0020g03980	EnsemblPlantsGene:VIT_05s0020g03980	EnsemblPlants:VIT_05s0020g03980.t01
unigene:Vvi.12469	unigene:Vvi.551	RefSeq:XP_002265460	RefSeq:XP_002265460.1	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:5650415..5653057

Molecular Weight (calculated)

51231.3 Da

IEP (calculated)

10.358

GRAVY (calculated)

-0.750

Length

464 amino acids

Sequence
(BLAST)

001: MGKTGKWIRN FLTGKKDKER DREKDKEKLN SIAIENPSTP ILIPPTTPKE KRRWSFRRSS ATSAGHKDSI SVDTIATTPP AGQPILDSEN EQKKHAMAVA
101: AATAAAAGAA VAAAQAAAAV IRLTAAATGR AGAIEEAAAV KIQAAFRAHL ARKALCALKG LVKLQALVRG NLVRKQATAT LRCMQALVTV QARARVQRIR
201: MTEETKPVNQ RQLTQRKSTQ DNRFRNTNHD KDRGMEENIK IVEMDQGESK GSSKGRNSYS NHAQTERAEP RFSTNYATNH AYSKQDNQQI SPAPSALTDM
301: SPRACSGHFE EYCFTTTQSS PQCYSAVSKP DCTGLPFAFP QTDCAESLSY DYPFFPNYMA NTESSKAKVR SHSAPKQRPE SFERQPSRRR ASMEGRNIPR
401: AMRMQRSSSH VGSTAQGYQY PWSIKLDRST VSLKDSECGS TSTVLTNTNY CKSLFAYDLQ GDRY

Best Arabidopsis Sequence Match ( AT4G14750.1 )
(BLAST)

001: MGKTSKWFRS LLTGKKERTK EHIIQSECVF TSSIPGTPKE KRRWSFRRSS ATGPPPPACA ITLKDSPPPP PPPPPPPPLQ QPFVVEIVDN EDEQIKNVSA
101: EEIEEFAAIK IQACYRSHLA RKALRALKGL VKLQALVRGH LVRKQATATL RCMQALITLQ AKAREQRIRM IGGDSTNPRT SIHKTRINNF YHENEENIKI
201: VEMDIQSKMY SPAPSALTEM SPRAYSSHFE DCNSFNTAQS SPQCFSRFKE YYNGDTLSSY DYPLFPNYMA NTQSSKAKAR SQSAPKQRPP EIYEKQMSGR
301: RRSSMEAPRN NGVPRAVRMQ RSSSQLGSNT AKESQQHHHH QYYPWMAIKL DRSNISLMES ECGSTSTVMT NTNYGRHVDV QGNNNMY

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.