Factsheet for VIT_17s0000g05840.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0108g00150.t01	Wine grape	nucleus	47.99	51.73
VIT_01s0026g01790.t01	Wine grape	cytosol	46.71	50.35
GSMUA_Achr8P26180_001	Banana	mitochondrion	35.79	42.48
Os05t0535900-01	Rice	cytosol	38.52	41.81
GSMUA_AchrUn_...	Banana	mitochondrion	33.55	41.3
KXG22418	Sorghum	cytosol, plastid	38.36	41.28
Zm00001d011138_P003	Maize	cytosol, plastid	39.0	41.12
Zm00001d038838_P001	Maize	mitochondrion	37.08	40.24
TraesCS1A01G357500.3	Wheat	cytosol, mitochondrion, plastid	37.4	40.24
TraesCS1D01G361800.3	Wheat	cytosol, mitochondrion, plastid	36.76	39.55
HORVU1Hr1G080360.4	Barley	mitochondrion	37.24	39.39
TraesCS1B01G374100.2	Wheat	cytosol, mitochondrion	36.6	39.38
Os01t0716200-01	Rice	nucleus	34.83	37.8
KXG33252	Sorghum	cytosol	33.71	37.57
TraesCS3A01G244100.1	Wheat	cytosol, plastid	32.74	37.23
TraesCS3B01G276000.1	Wheat	cytosol, plastid	32.74	37.23
TraesCS3D01G247300.1	Wheat	cytosol, plastid	32.42	36.86
Zm00001d043655_P002	Maize	mitochondrion	32.58	35.3
HORVU3Hr1G067750.8	Barley	cytosol, plastid	31.3	35.07
VIT_00s0684g00020.t01	Wine grape	mitochondrion	6.42	29.2
VIT_16s0100g00620.t01	Wine grape	cytosol	12.84	24.02
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	15.41	23.88
VIT_11s0016g03030.t01	Wine grape	cytosol	16.21	23.22
VIT_02s0025g04120.t01	Wine grape	mitochondrion	18.3	23.08
VIT_08s0007g05960.t01	Wine grape	cytosol	15.73	23.06
VIT_05s0020g03980.t01	Wine grape	cytosol	17.01	22.84
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	17.18	22.81
VIT_14s0030g01880.t01	Wine grape	nucleus	13.32	21.23
VIT_08s0007g05980.t01	Wine grape	cytosol	14.93	20.58
VIT_18s0001g13870.t01	Wine grape	nucleus	21.03	16.54

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100263965	wikigene:100263965	MapMan:35.1	ProteinID:CCB43107	ProteinID:CCB43107.1
InterPro:DUF4005	UniProt:F6GT98	EMBL:FN594950	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100263965	wikigene:LOC100263965	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF14	SMART:SM00015	SignalP:SignalP-noTM	UniParc:UPI0002109CCD
ArrayExpress:VIT_17s0000g05840	EnsemblPlantsGene:VIT_17s0000g05840	EnsemblPlants:VIT_17s0000g05840.t01	unigene:Vvi.9678	RefSeq:XP_002274035	RefSeq:XP_002274035.1

Description

No Description!

Coordinates

chr17:+:6368468..6379327

Molecular Weight (calculated)

69003.6 Da

IEP (calculated)

10.399

GRAVY (calculated)

-0.635

Length

623 amino acids

Sequence
(BLAST)

001: MVDFVLGRTT FVWPCHLLFF LQVISQETLE TICTRRGVQA FVILYCSIPT MGKSPGKWIK TLLFGKKASK SNFSKGREKV ANEREVWVAA KAPEADLGLD
101: PLVASEAPNI IDKNEMLEFE NREASAGGIL SGDLDADIQG CRQLSTLNNP ERIRQERAAT KAQAAFRGYL ARRAFRALKG IIRLQALIRG HLVRRQAICT
201: LYCMLGIVKI QALARGRRIR HSELGLRVNK KCIQVKPLKG KLGDPAGVSS STQIAKRTAN AFVHKLLASS PTVMPLHLQY DSAEPNSDFY WLQCWSASHF
301: WKPIPQPRQV PDSKSQKKQG NPLAIETETG RPKRSVRRIP AMNVDSVSAQ STTEFEKPKR NFKKLSSRPA DPVLEHPQNE LEKVKRNLRK VHNPVVESSA
401: QPGNETEKPK QSMEKMSSTP GHDVLEQSMG DSAEKMNMET PVTVSKLPEV ETTTEPPAVI WVNEASDSLH NDQTVVELQP VENSGKDENI PVANEELSSK
501: EDAISNENQK SSRKASIPAK PERAENGLES SPKLPSYMAT TQSAKAKLRA QGSPRLGQDV PEKNNITRRH SLPSSTNGKM NSLSPKTQKP VQGNGKGGNR
601: SERSILSSKD GNAKVAVQAE WRR

Best Arabidopsis Sequence Match ( AT1G74690.1 )
(BLAST)

001: MGKSTKWLKN VLLGKKTSKS SGSKDKERVV SGKEVLVTSK VEESDVVSDL PSFEVAETNT VDRSGGMLET QNVGPEEISD DEIELPEGKS TDSQNVAPVQ
101: DHSLSDAERI QREIAATSVQ AAFRGYLARR AFWALKGIIR LQALIRGHLV RRQAVATLFS VMGIVRLQAF ARGREIRKSD IGVQVYRKCR LQLLQGNKLA
201: NPTDAYLGIK KLTANAFAQK LLASSPKVLP VHAYDTSNPN SNLIWLENWS ASCFWKPVPQ PKKTISRKPQ NRLLVEAESA KPKKSVRKVP ASNFESSSVQ
301: TSFEFEKPKR SFRKVSSQSI EPPAVEDPQI ELEKVKRSLR KVHNPVVESS IQPQRSPRKE VEKPKLGVEK TRESSYPLVH ETAEEPVNVC DEKKKQEISE
401: QPEEEVHALE MEVHTPGPLE TNEALDSSLV NQIDSNEKAM VEEKPSMEKD TKEEKTPKPN NKENSAGKEN QKSRKKGSAT SKTEREESNG HHETSPSIPS
501: YMQATKSAKA KLRLQGSPKS AEQDGTEKAT VPRRHSLPSP GNGRITSHSP RTTRLANSGD KTGNKKEKPL LSSREGNAKT TPAERKR

Arabidopsis Description

IQD31Protein IQ-DOMAIN 31 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4D8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.