Factsheet for VIT_09s0002g03360.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g066430.2.1	Tomato	nucleus	71.64	73.47
KRH47199	Soybean	cytosol	70.65	71.72
KRH44268	Soybean	cytosol	69.65	69.65
PGSC0003DMT400042595	Potato	nucleus	26.12	69.08
VIT_11s0016g03030.t01	Wine grape	cytosol	71.64	66.21
CDY68636	Canola	cytosol	56.72	58.61
Bra021181.1-P	Field mustard	cytosol	56.47	58.35
CDX75883	Canola	cytosol	54.23	58.13
Bra001633.1-P	Field mustard	cytosol	53.73	57.91
CDY43103	Canola	cytosol	52.99	57.88
CDX82400	Canola	cytosol	53.48	57.64
AT3G16490.1	Thale cress	cytosol	55.72	57.58
CDY67178	Canola	cytosol, mitochondrion	54.98	56.96
Bra022163.1-P	Field mustard	cytosol	54.48	56.59
CDX92076	Canola	cytosol	54.48	56.59
GSMUA_Achr6P14870_001	Banana	cytosol, mitochondrion	50.0	53.6
GSMUA_Achr10P...	Banana	cytosol	57.96	52.83
GSMUA_Achr5P06520_001	Banana	cytosol, mitochondrion	51.99	51.48
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	47.01	51.22
GSMUA_Achr3P17570_001	Banana	cytosol, mitochondrion	51.24	50.99
GSMUA_AchrUn_...	Banana	cytosol	47.01	49.87
GSMUA_Achr7P13670_001	Banana	cytosol, mitochondrion	46.77	49.87
AT1G51960.1	Thale cress	cytosol, mitochondrion	43.03	49.29
Bra014304.1-P	Field mustard	cytosol, mitochondrion	35.32	48.97
CDY46537	Canola	cytosol, mitochondrion	35.32	48.97
CDY53440	Canola	mitochondrion	35.07	48.62
CDY45643	Canola	cytosol	38.56	47.55
Os01t0190500-01	Rice	cytosol, mitochondrion	54.98	47.53
Os05t0187500-01	Rice	cytosol	55.22	47.23
TraesCS1B01G142100.1	Wheat	cytosol	53.23	47.14
TraesCS1D01G123800.1	Wheat	cytosol	52.99	46.92
TraesCS1A01G122900.1	Wheat	cytosol, plastid	52.74	46.7
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	53.23	46.42
Bra030407.1-P	Field mustard	cytosol	38.81	46.29
GSMUA_Achr8P20170_001	Banana	cytosol, mitochondrion	46.02	46.25
Zm00001d037688_P001	Maize	mitochondrion	52.99	46.1
TraesCS3B01G127100.1	Wheat	cytosol	52.99	46.0
TraesCS3A01G108100.1	Wheat	cytosol, mitochondrion	53.23	45.82
Zm00001d010366_P001	Maize	cytosol, mitochondrion	52.24	44.78
KXG21487	Sorghum	cytosol, mitochondrion	53.48	43.61
EES02320	Sorghum	mitochondrion	49.75	41.67
Zm00001d039510_P001	Maize	cytosol, mitochondrion	49.01	40.96
Zm00001d008819_P001	Maize	mitochondrion	46.77	40.34
HORVU1Hr1G028250.6	Barley	mitochondrion	52.74	40.23
HORVU3Hr1G019630.3	Barley	endoplasmic reticulum, plastid	52.24	36.65
VIT_00s0684g00020.t01	Wine grape	mitochondrion	11.19	32.85
VIT_02s0025g04120.t01	Wine grape	mitochondrion	40.3	32.79
VIT_05s0020g03980.t01	Wine grape	cytosol	36.07	31.25
VIT_08s0007g05960.t01	Wine grape	cytosol	29.1	27.53
VIT_14s0030g01880.t01	Wine grape	nucleus	25.37	26.09
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	29.6	25.37
VIT_16s0100g00620.t01	Wine grape	cytosol	20.9	25.23
VIT_08s0007g05980.t01	Wine grape	cytosol	27.36	24.34
VIT_14s0108g00150.t01	Wine grape	nucleus	24.38	16.95
VIT_01s0026g01790.t01	Wine grape	cytosol	24.13	16.78
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	23.88	15.41
VIT_18s0001g13870.t01	Wine grape	nucleus	26.37	13.38

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100241183	wikigene:100241183	MapMan:35.2	EMBL:AM453602	ProteinID:CAN69979
ProteinID:CAN69979.1	ProteinID:CCB59414	ProteinID:CCB59414.1	InterPro:DUF4005	UniProt:F6HY91	EMBL:FN596494
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100241183
wikigene:LOC100241183	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF10
SMART:SM00015	UniParc:UPI00015C837E	ArrayExpress:VIT_09s0002g03360	EnsemblPlantsGene:VIT_09s0002g03360	EnsemblPlants:VIT_09s0002g03360.t01	RefSeq:XP_002277925
RefSeq:XP_002277925.2	RefSeq:XP_010654611.1	RefSeq:XP_010654612.1	RefSeq:XP_010654613.1	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:3038580..3040981

Molecular Weight (calculated)

44847.5 Da

IEP (calculated)

11.385

GRAVY (calculated)

-0.621

Length

402 amino acids

Sequence
(BLAST)

001: MGRATRWLRG LLGMKKDKEQ VENSTAGDRK EKKRWSFAKP GRDTSGVGQN PVNFPANIPV DSAWLRSYIS ETEKEQNKHA IAVAAATAAA ADAAVAAAQA
101: AVAVVRLTSH GRGTLFGGGR DRWAATKIQT VFRGYLARKA HRALKGLVKL QALVRGFLVR KRAAATLHSM QALIRAQAAV RSQRTLRARN KENRFPPEMR
201: PRRSIERFEE TRSEFHSKRM STSFETSVNA FDESPKIVEI DTFKPKSRSR RMMNTSTSDS GEDPPYLTLS SPLPCPVPAR LSIPDCRNFQ DFEWCFTGDE
301: CRFSTAQSTP RLANTSRAVA PVTPAKSVCG DSFFRPYSNF PNYMANTQSF KAKLRSHSAP KQRPEPGPKR RFSLNEIMAS RTSLSGVRMQ RSCSQVQEAL
401: NF

Best Arabidopsis Sequence Match ( AT3G16490.1 )
(BLAST)

001: MGRAARWFKG IFGMKKSKEK ENCVSGDVGG EAGGSNIHRK VLQADSVWLR TYLAETDKEQ NKHAIAVAAA TAAAADAAVA AAQAAVAVVR LTSNGRSGGY
101: SGNAMERWAA VKIQSVFKGY LARKALRALK GLVKLQALVR GYLVRKRAAE TLHSMQALIR AQTSVRSQRI NRNNMFHPRH SLERLDDSRS EIHSKRISIS
201: VEKQSNHNNN AYDETSPKIV EIDTYKTKSR SKRMNVAVSE CGDDFIYQAK DFEWSFPGEK CKFPTAQNTP RFSSSMANNN YYYTPPSPAK SVCRDACFRP
301: SYPGLMTPSY MANTQSFKAK VRSHSAPRQR PDRKRLSLDE IMAARSSVSG VRMVQPQPQP QTQTQQQKRS PCSYDHQFRQ NETDFRFYN

Arabidopsis Description

IQD26At3g16490 [Source:UniProtKB/TrEMBL;Acc:Q9LK76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.