Factsheet for VIT_16s0100g00620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G005320.2	Barley	cytosol	35.44	32.42
GSMUA_Achr8P11920_001	Banana	cytosol	33.93	31.48
KRG91452	Soybean	cytosol	42.64	31.14
CDX78285	Canola	plastid	32.13	31.1
Bra009281.1-P	Field mustard	mitochondrion	33.03	31.07
Bra005929.1-P	Field mustard	plastid	31.83	30.9
CDX70019	Canola	cytosol, mitochondrion	32.73	30.79
CDX98994	Canola	mitochondrion	32.73	30.79
KRH09113	Soybean	cytosol	43.84	30.61
KRH35361	Soybean	cytosol, mitochondrion	42.34	30.39
VIT_02s0025g04120.t01	Wine grape	mitochondrion	44.14	29.76
KRH38565	Soybean	cytosol	42.94	29.67
CDX86928	Canola	mitochondrion, plastid	34.83	29.44
CDY00253	Canola	plastid	34.83	29.44
AT5G62070.1	Thale cress	cytosol, plastid	35.44	29.28
Bra010055.1-P	Field mustard	plastid	35.14	28.89
VIT_00s0684g00020.t01	Wine grape	mitochondrion	11.71	28.47
CDY00251	Canola	plastid	35.14	28.47
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	36.04	28.37
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	39.04	28.32
CDX81042	Canola	plastid	32.13	27.65
Zm00001d002630_P002	Maize	mitochondrion	37.84	27.57
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	34.53	26.81
EES12687	Sorghum	cytosol, mitochondrion	37.54	26.77
Os04t0569900-01	Rice	cytosol, mitochondrion	37.24	26.72
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	35.14	26.71
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	37.84	26.47
AT5G07240.2	Thale cress	plastid	35.14	26.17
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	38.14	26.13
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	35.44	25.65
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	35.14	25.32
Zm00001d026084_P001	Maize	mitochondrion	36.94	24.8
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	25.23	20.9
VIT_05s0020g03980.t01	Wine grape	cytosol	28.23	20.26
VIT_11s0016g03030.t01	Wine grape	cytosol	25.83	19.77
VIT_14s0030g01880.t01	Wine grape	nucleus	20.42	17.39
VIT_08s0007g05960.t01	Wine grape	cytosol	20.42	16.0
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	21.02	14.93
VIT_14s0108g00150.t01	Wine grape	nucleus	25.53	14.71
VIT_08s0007g05980.t01	Wine grape	cytosol	19.52	14.38
VIT_01s0026g01790.t01	Wine grape	cytosol	24.32	14.01
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	24.02	12.84
VIT_18s0001g13870.t01	Wine grape	nucleus	22.82	9.6

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	ProteinID:CBI31824	ProteinID:CBI31824.3	UniProt:D7TMV1	InterPro:DUF4005
EMBL:FN596000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	SMART:SM00015
UniParc:UPI0001BE4024	ArrayExpress:VIT_16s0100g00620	EnsemblPlantsGene:VIT_16s0100g00620	EnsemblPlants:VIT_16s0100g00620.t01	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:16113369..16117083

Molecular Weight (calculated)

37604.3 Da

IEP (calculated)

11.030

GRAVY (calculated)

-0.808

Length

333 amino acids

Sequence
(BLAST)

001: MDVAAVIIQS AFRGYLARRA LKALKALVKL QALVRGHIVR KRSADMLRRM QALARVQARA RVSRARAILE SSHSTRRFSL SHHMRWGSNP NISDIFNREK
101: AQQDSSWLEQ WMEECSWNDR RRDSSLKTRD PDHHDDESRD KILEVDTWKP DPNSMGSKRM HQKSTPQFSS YYTKPQKPIS CQSMGRAPSS LSSLQCPFEV
201: DEAAVYTADN SPQALPSLTR LGSSSARRRS TTALTPPRTD SSTNFFSDHP KYMANTQSSQ AKVRSQSAPR LRLNFDKLGS SKRSFHGCWD PNSSPNKSII
301: NKGRSGSGSG CLDRVGSSTR LSCREIEQFQ TLI

Best Arabidopsis Sequence Match ( AT5G07240.1 )
(BLAST)

001: MGFFGRLFGS KKQEKATPNR RRWSFATRSS HPENDSSSHS SKRRGDEDVL NGDKHAIAVA AATAAVAEAA LAAARAAAEV VRLTNGGRNS SVKQISRSNR
101: RWSQEYKAAM KIQSAFRGYL ARRALRALKA LVKLQALVKG HIVRKQTADM LRRMQTLVRL QARARASRSS HVSDSSHPPT LMIPSSPQSF HARCVSEAEY
201: SKVIAMDHHH NNHRSPMGSS RLLDQWRTEE SLWSAPKYNE DDDKILEVDT WKPHFRESPR KRGSLVVPTS VENSPQLRSR TGSSSGGSRR KTPFTPARSE
301: YEYYSGYHPN YMANTESYKA KVRSQSAPRQ RLQDLPSESG YKRSIQGQYY YYTPAAERSF DQRSDNGIAG YRGVSDGLDR NQSDKSKMYT SFFSSNPLFF
401: Q

Arabidopsis Description

IQD24IQ-domain 24 [Source:TAIR;Acc:AT5G07240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.