CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	KRG93305	AT3G27960.1	21798944
AT5G62070.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91452	Soybean	cytosol	92.46	94.08
KRH09113	Soybean	cytosol	67.89	66.04
KRH38565	Soybean	cytosol	67.89	65.35
Bra005929.1-P	Field mustard	plastid	38.36	51.9
CDX78285	Canola	plastid	38.36	51.74
Bra009281.1-P	Field mustard	mitochondrion	38.79	50.85
CDX98994	Canola	mitochondrion	38.79	50.85
CDX70019	Canola	cytosol, mitochondrion	38.36	50.28
CDX86928	Canola	mitochondrion, plastid	40.95	48.22
CDY00253	Canola	plastid	40.73	47.97
AT5G62070.1	Thale cress	cytosol, plastid	41.38	47.64
Bra010055.1-P	Field mustard	plastid	40.73	46.67
GSMUA_Achr8P11920_001	Banana	cytosol	35.99	46.52
CDX81042	Canola	plastid	38.79	46.51
CDY00251	Canola	plastid	40.73	45.99
VIT_16s0100g00620.t01	Wine grape	cytosol	30.39	42.34
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	43.53	41.56
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	40.95	41.39
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	42.46	41.39
Os04t0569900-01	Rice	cytosol, mitochondrion	40.95	40.95
Zm00001d002630_P002	Maize	mitochondrion	40.3	40.92
EES12687	Sorghum	cytosol, mitochondrion	41.16	40.9
AT5G07240.2	Thale cress	plastid	38.58	40.04
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	36.85	39.86
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	39.66	39.83
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	39.44	39.78
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	36.85	39.04
Zm00001d026084_P001	Maize	mitochondrion	41.16	38.51
HORVU0Hr1G005320.2	Barley	cytosol	30.17	38.46
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	34.91	38.3
KRH57246	Soybean	cytosol	35.78	37.3
KRH03972	Soybean	cytosol	35.78	37.14
KRH77498	Soybean	cytosol, mitochondrion	30.82	36.11
KRH07958	Soybean	mitochondrion	10.56	34.75
KRH47199	Soybean	cytosol	28.45	33.33
KRH60203	Soybean	cytosol, mitochondrion	25.43	32.78
KRH44268	Soybean	cytosol	27.59	31.84
KRH41488	Soybean	cytosol, mitochondrion	27.16	28.9
KRH48992	Soybean	endoplasmic reticulum	20.91	28.7
KRH74242	Soybean	cytosol, mitochondrion	25.86	28.57
KRG91354	Soybean	cytosol, plastid	28.66	28.42
KRH35475	Soybean	cytosol	28.45	28.14
KRH09951	Soybean	cytosol	22.84	28.04
KRH23382	Soybean	cytosol	22.84	27.89
KRH48993	Soybean	plastid	5.39	26.6
KRH31669	Soybean	cytosol, mitochondrion	22.41	24.59
KRH69109	Soybean	nucleus	21.98	24.46
KRH23930	Soybean	nucleus	23.92	24.13
KRH68719	Soybean	cytosol	18.97	23.53
KRH39865	Soybean	nucleus	23.49	23.24
KRG96957	Soybean	cytosol	18.32	22.97
KRH33197	Soybean	cytosol, mitochondrion	18.75	22.31
KRH29958	Soybean	cytosol, mitochondrion	21.34	21.66
KRH63082	Soybean	cytosol	20.69	21.33
KRH63392	Soybean	cytosol	20.69	16.47
KRG99144	Soybean	cytosol, plastid	19.18	16.27
KRH56937	Soybean	cytosol	20.47	16.21
KRH54515	Soybean	cytosol	20.04	15.92
KRH45861	Soybean	plastid	18.75	15.9
KRH03447	Soybean	nucleus	19.61	15.48
KRH69321	Soybean	cytosol, mitochondrion	15.95	13.14
KRH74806	Soybean	cytosol, plastid	15.95	13.14
KRH51729	Soybean	cytosol	22.2	12.13
KRH61064	Soybean	nucleus	12.93	8.25

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:102668067	MapMan:35.2	EMBL:ACUP02006668	InterPro:DUF4005	EnsemblPlantsGene:GLYMA_10G238300
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:K7LL46
EnsemblPlants:KRH35361	ProteinID:KRH35361	ProteinID:KRH35361.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI0002954AC9
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:46688122..46693051

Molecular Weight (calculated)

51003.6 Da

IEP (calculated)

11.072

GRAVY (calculated)

-0.700

Length

464 amino acids

Sequence
(BLAST)

001: MGFLRRLFGA KKPSDCKSGK KRWTFLKHTV RNKSLPPPPI PPALNTHFDS STPLDANKHA IAVAAATAAV AEAALAAAHA AAEVVRLTSG GVAATSTSSR
101: TAVTAARVGN LETAAVRIQS AFRGYLARRA LRALKALVKL QALVRGHIVR KQSADMLRRM QTLVRLQAQA RASRAHLSDN TPSFNFNSSL LSHYPVPEEY
201: EHPPRGFSTK FDGSSILKRC SSNANSRNVD SERVGFDSNW LNRWMELDNK CSQTGDASLK NNGRPDDDKS DKILEVDTWR PHFKSHHNSS SSSQAAHYYL
301: NADYNNENFA AAHESPSKRS AKALNQSFSS REVLQLRSLK FHKGKEEASS RTADNSPQAF SANSRNGSGA RRGGGPFTPT RSECSLGFFS GYTGHPNYMA
401: NTESFRAKVR SQSAPRQRLE FDRYGSTRRP VPLVGPNSDH DSDLRNKVLP PFNQTNRIGS SNLR

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.