CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62070.1	KRG93305	AT3G27960.1	21798944
AT5G62070.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35361	Soybean	cytosol, mitochondrion	94.08	92.46
KRH09113	Soybean	cytosol	69.74	66.67
KRH38565	Soybean	cytosol	69.3	65.56
Bra005929.1-P	Field mustard	plastid	39.04	51.9
CDX78285	Canola	plastid	39.04	51.74
CDX98994	Canola	mitochondrion	39.25	50.56
Bra009281.1-P	Field mustard	mitochondrion	39.04	50.28
CDX70019	Canola	cytosol, mitochondrion	38.82	50.0
CDX86928	Canola	mitochondrion, plastid	41.45	47.97
CDY00253	Canola	plastid	41.23	47.72
AT5G62070.1	Thale cress	cytosol, plastid	41.89	47.39
Bra010055.1-P	Field mustard	plastid	41.67	46.91
GSMUA_Achr8P11920_001	Banana	cytosol	36.62	46.52
CDX81042	Canola	plastid	39.47	46.51
CDY00251	Canola	plastid	41.45	45.99
VIT_16s0100g00620.t01	Wine grape	cytosol	31.14	42.64
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	41.89	41.61
Zm00001d002630_P002	Maize	mitochondrion	41.23	41.14
EES12687	Sorghum	cytosol, mitochondrion	41.89	40.9
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	43.42	40.74
Os04t0569900-01	Rice	cytosol, mitochondrion	41.45	40.73
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	42.11	40.34
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	40.35	39.83
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	40.13	39.78
AT5G07240.2	Thale cress	plastid	38.82	39.6
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	37.06	39.39
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	37.5	39.04
HORVU0Hr1G005320.2	Barley	cytosol	30.92	38.74
Zm00001d026084_P001	Maize	mitochondrion	41.89	38.51
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	35.09	37.83
KRH57246	Soybean	cytosol	36.62	37.53
KRH03972	Soybean	cytosol	36.62	37.36
KRH77498	Soybean	cytosol, mitochondrion	32.02	36.87
KRH07958	Soybean	mitochondrion	10.75	34.75
KRH47199	Soybean	cytosol	28.95	33.33
KRH60203	Soybean	cytosol, mitochondrion	25.66	32.5
KRH44268	Soybean	cytosol	27.85	31.59
KRH74242	Soybean	cytosol, mitochondrion	26.54	28.81
KRH48993	Soybean	plastid	5.92	28.72
KRH48992	Soybean	endoplasmic reticulum	21.27	28.7
KRH41488	Soybean	cytosol, mitochondrion	27.41	28.67
KRG91354	Soybean	cytosol, plastid	28.95	28.21
KRH09951	Soybean	cytosol	23.25	28.04
KRH35475	Soybean	cytosol	28.73	27.93
KRH23382	Soybean	cytosol	23.25	27.89
KRH31669	Soybean	cytosol, mitochondrion	22.81	24.59
KRH69109	Soybean	nucleus	22.37	24.46
KRH68719	Soybean	cytosol	19.3	23.53
KRH23930	Soybean	nucleus	23.68	23.48
KRG96957	Soybean	cytosol	18.86	23.24
KRH39865	Soybean	nucleus	23.25	22.6
KRH33197	Soybean	cytosol, mitochondrion	19.08	22.31
KRH29958	Soybean	cytosol, mitochondrion	21.49	21.44
KRH63082	Soybean	cytosol	20.83	21.11
KRH63392	Soybean	cytosol	21.05	16.47
KRG99144	Soybean	cytosol, plastid	19.52	16.27
KRH56937	Soybean	cytosol	20.83	16.21
KRH54515	Soybean	cytosol	20.39	15.92
KRH03447	Soybean	nucleus	20.39	15.82
KRH45861	Soybean	plastid	18.86	15.72
KRH74806	Soybean	cytosol, plastid	16.23	13.14
KRH69321	Soybean	cytosol, mitochondrion	16.23	13.14
KRH51729	Soybean	cytosol	22.37	12.01
KRH61064	Soybean	nucleus	13.16	8.25

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100783694	MapMan:35.2	EMBL:ACUP02012688	InterPro:DUF4005	EnsemblPlantsGene:GLYMA_20G156200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:K7N3N3
EnsemblPlants:KRG91452	ProteinID:KRG91452	ProteinID:KRG91452.1	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI000233DE64
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:39501743..39506464

Molecular Weight (calculated)

50276.7 Da

IEP (calculated)

11.132

GRAVY (calculated)

-0.714

Length

456 amino acids

Sequence
(BLAST)

001: MGFLRRIFGA KKPSDSKSAK KRWTFLKHTV RNKSLPPPPP PSAVTYFDSS TPLDANKHAI AVAAATAAVA EAALAAAHAA AEVVRLTSGG VSATSTRPAA
101: MAARVGNLET AAVRIQSAFR GYLARRALRA LKALVKLQAL VRGHIVRKQS ADMLRRMQTL VRLQAQARAS RAHLSDPSFN FNSSLSHYPV PEEYEHPPRG
201: FSTKFDGSSI LKRCSSNANS RNVDSERARF DSNWLNRWME LDNKSSQTGD ASLKNGRPDD DKSDKILEVD TWRPHFKSHH SSSSFQAAHY YLSSDYNNEN
301: FGAAHESPSK RSAKALNQSF SSREVLQLSS LKFHKGKEEA SSRTADNSPQ TFSANSRNGS GARRGGGPFT PTRSECSWGF LSGYPGHPNY MANTESFRAK
401: VRSQSAPRQR LEFDRYGSTR RPVHLVGSNS DHDSDLRNKV LPAFNQMNRI GSSNLR

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.