Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G274500.1 | |
| TraesCS6B01G302000.1 | |
| TraesCS6D01G254800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62070.1 | TraesCS6A01G274500.1 | AT3G27960.1 | 21798944 |
| AT5G62070.1 | TraesCS6B01G302000.1 | AT3G27960.1 | 21798944 |
| AT5G62070.1 | TraesCS6D01G254800.1 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G418900.1 | Wheat | cytosol, mitochondrion | 96.75 | 97.17 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 75.97 | 96.43 |
| EES12687 | Sorghum | cytosol, mitochondrion | 83.12 | 82.23 |
| Zm00001d002630_P002 | Maize | mitochondrion | 80.74 | 81.62 |
| Os04t0569900-01 | Rice | cytosol, mitochondrion | 81.17 | 80.82 |
| Zm00001d026084_P001 | Maize | mitochondrion | 79.0 | 73.59 |
| GSMUA_Achr5P13660_001 | Banana | cytosol, mitochondrion | 54.55 | 57.53 |
| GSMUA_Achr3P18210_001 | Banana | cytosol, mitochondrion | 51.95 | 55.94 |
| VIT_02s0025g04120.t01 | Wine grape | mitochondrion | 52.81 | 49.39 |
| Solyc08g007920.1.1 | Tomato | cytosol | 22.94 | 45.3 |
| Solyc08g080470.2.1 | Tomato | plastid | 48.48 | 44.89 |
| KRH03972 | Soybean | cytosol | 43.29 | 44.74 |
| KRH57246 | Soybean | cytosol | 42.86 | 44.49 |
| Solyc08g007930.1.1 | Tomato | cytosol | 21.86 | 44.49 |
| PGSC0003DMT400007855 | Potato | cytosol, plastid | 47.4 | 43.8 |
| KRH77498 | Soybean | cytosol, mitochondrion | 37.01 | 43.18 |
| CDX78285 | Canola | plastid | 30.95 | 41.57 |
| Bra005929.1-P | Field mustard | plastid | 30.74 | 41.4 |
| KRG91452 | Soybean | cytosol | 39.83 | 40.35 |
| Bra009281.1-P | Field mustard | mitochondrion | 30.74 | 40.11 |
| CDX98994 | Canola | mitochondrion | 30.74 | 40.11 |
| CDX70019 | Canola | cytosol, mitochondrion | 30.74 | 40.11 |
| KRH09113 | Soybean | cytosol | 41.13 | 39.83 |
| KRH35361 | Soybean | cytosol, mitochondrion | 39.83 | 39.66 |
| CDY53133 | Canola | nucleus | 40.91 | 38.89 |
| CDY41368 | Canola | mitochondrion, plastid | 35.28 | 38.81 |
| KRH38565 | Soybean | cytosol | 40.48 | 38.8 |
| CDY41252 | Canola | cytosol, mitochondrion | 40.69 | 38.52 |
| CDX98787 | Canola | mitochondrion | 24.46 | 38.18 |
| Bra020822.1-P | Field mustard | mitochondrion, plastid | 34.63 | 38.1 |
| CDX76341 | Canola | mitochondrion, plastid | 34.63 | 38.1 |
| Solyc03g026110.2.1 | Tomato | cytosol, mitochondrion | 40.04 | 38.07 |
| AT4G23060.1 | Thale cress | mitochondrion, nucleus | 39.61 | 37.81 |
| Bra013672.1-P | Field mustard | mitochondrion, nucleus | 40.48 | 37.7 |
| PGSC0003DMT400014796 | Potato | cytosol | 29.22 | 37.5 |
| CDX81042 | Canola | plastid | 31.17 | 37.21 |
| PGSC0003DMT400037043 | Potato | mitochondrion, nucleus | 38.31 | 37.18 |
| CDX94150 | Canola | nucleus | 37.23 | 37.07 |
| Bra019337.1-P | Field mustard | nucleus | 37.66 | 36.94 |
| CDY00253 | Canola | plastid | 31.39 | 36.8 |
| AT5G62070.1 | Thale cress | cytosol, plastid | 32.03 | 36.72 |
| CDX98786 | Canola | nucleus | 37.66 | 36.63 |
| CDX86928 | Canola | mitochondrion, plastid | 31.17 | 36.55 |
| Bra010055.1-P | Field mustard | plastid | 31.39 | 35.8 |
| CDY00251 | Canola | plastid | 31.6 | 35.52 |
| VIT_16s0100g00620.t01 | Wine grape | cytosol | 25.32 | 35.14 |
| TraesCS3D01G109900.1 | Wheat | cytosol, mitochondrion | 33.12 | 33.19 |
| TraesCS1D01G123800.1 | Wheat | cytosol | 31.6 | 32.16 |
| AT5G07240.2 | Thale cress | plastid | 30.74 | 31.77 |
| TraesCS2D01G470000.1 | Wheat | cytosol, mitochondrion | 29.87 | 31.58 |
| TraesCS5D01G387500.1 | Wheat | cytosol | 30.74 | 30.67 |
| TraesCS4D01G275700.3 | Wheat | cytosol, mitochondrion | 30.95 | 29.61 |
| TraesCS1D01G344200.1 | Wheat | cytosol | 21.21 | 28.32 |
| TraesCS3D01G275900.1 | Wheat | mitochondrion | 21.86 | 26.58 |
| TraesCS5D01G168000.2 | Wheat | nucleus | 27.06 | 26.04 |
| TraesCS7D01G341000.1 | Wheat | cytosol | 20.56 | 21.44 |
| TraesCS1D01G361800.3 | Wheat | cytosol, mitochondrion, plastid | 22.29 | 17.79 |
| TraesCS3D01G247300.1 | Wheat | cytosol, plastid | 21.0 | 17.7 |
| TraesCS4D01G327500.1 | Wheat | mitochondrion | 12.99 | 15.11 |
| TraesCS2D01G492600.1 | Wheat | nucleus | 21.86 | 11.73 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G398300.1 | EnsemblPlantsGene:TraesCS2D01G398300 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF52 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | SEG:seg | SMART:SM00015 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2D:+:511437219..511439305
Molecular Weight (calculated)
49648.3 Da
IEP (calculated)
11.162
GRAVY (calculated)
-0.747
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWASRWLRG LLGGGKKAGE HKPEREKKRW GFGKSFREKD PVRPPAPPVQ RAATPRRTYA ASDDGGDEQN KRAIAVAAAT AAVAEAAVAA AQAAAAVVRL
101: TSSGRCPPAG AKHEEWAAVR IQAAFRGYLA RRALKALRGL VKLQALVRGN IVRRQAAETL RCMQALVSVQ SRARATRATR SRQAAAHPGA TTPEKYEQAA
201: YDGALRHGRS GSLKGGSSKT PGSERMSRER SESCGRNWLD RWVEERYMDD EKNAKILEVD PGKPGRHASK RRSSSGGHHH QSSCSTRTSE QNSRSYATMP
301: DSPSRDSTTA QQSVPSPSSV GMGAAEALSP LRLPADLAAE LYESPQFFSA TSRAGSSKRG GAFFTPTKSE CARSLFGGYS DYPNYMSNTE SFRAKARSQS
401: APKQRPLYEK SGSLRKASAH AFAPGAAAGQ RSSASASLHA KFTNKAYPGS GRLDRLGMPV KY
101: TSSGRCPPAG AKHEEWAAVR IQAAFRGYLA RRALKALRGL VKLQALVRGN IVRRQAAETL RCMQALVSVQ SRARATRATR SRQAAAHPGA TTPEKYEQAA
201: YDGALRHGRS GSLKGGSSKT PGSERMSRER SESCGRNWLD RWVEERYMDD EKNAKILEVD PGKPGRHASK RRSSSGGHHH QSSCSTRTSE QNSRSYATMP
301: DSPSRDSTTA QQSVPSPSSV GMGAAEALSP LRLPADLAAE LYESPQFFSA TSRAGSSKRG GAFFTPTKSE CARSLFGGYS DYPNYMSNTE SFRAKARSQS
401: APKQRPLYEK SGSLRKASAH AFAPGAAAGQ RSSASASLHA KFTNKAYPGS GRLDRLGMPV KY
001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY
Arabidopsis Description
IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.