Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62070.1 | CDX86457 | AT3G27960.1 | 21798944 |
| AT5G62070.1 | CDY58518 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00253 | Canola | plastid | 95.13 | 99.24 |
| CDX86928 | Canola | mitochondrion, plastid | 93.92 | 97.97 |
| Bra010055.1-P | Field mustard | plastid | 95.13 | 96.54 |
| AT5G62070.1 | Thale cress | cytosol, plastid | 80.29 | 81.89 |
| CDX78285 | Canola | plastid | 56.93 | 68.02 |
| CDX98994 | Canola | mitochondrion | 58.15 | 67.51 |
| CDX70019 | Canola | cytosol, mitochondrion | 57.66 | 66.95 |
| CDX81042 | Canola | plastid | 56.93 | 60.47 |
| CDX90650 | Canola | mitochondrion | 10.46 | 41.75 |
| KRG91452 | Soybean | cytosol | 45.99 | 41.45 |
| KRH09113 | Soybean | cytosol | 47.93 | 41.3 |
| CDY29016 | Canola | mitochondrion | 10.22 | 40.78 |
| KRH35361 | Soybean | cytosol, mitochondrion | 45.99 | 40.73 |
| GSMUA_Achr8P11920_001 | Banana | cytosol | 35.52 | 40.67 |
| KRH38565 | Soybean | cytosol | 47.69 | 40.66 |
| GSMUA_Achr5P13660_001 | Banana | cytosol, mitochondrion | 37.47 | 35.16 |
| VIT_16s0100g00620.t01 | Wine grape | cytosol | 28.47 | 35.14 |
| GSMUA_Achr5P20090_001 | Banana | cytosol, mitochondrion | 38.2 | 34.2 |
| GSMUA_Achr3P18210_001 | Banana | cytosol, mitochondrion | 35.28 | 33.8 |
| EES12687 | Sorghum | cytosol, mitochondrion | 37.96 | 33.4 |
| Solyc03g026110.2.1 | Tomato | cytosol, mitochondrion | 39.42 | 33.33 |
| Os04t0569900-01 | Rice | cytosol, mitochondrion | 37.23 | 32.97 |
| CDY46537 | Canola | cytosol, mitochondrion | 23.11 | 32.76 |
| Zm00001d002630_P002 | Maize | mitochondrion | 36.25 | 32.6 |
| CDY53440 | Canola | mitochondrion | 22.87 | 32.41 |
| PGSC0003DMT400037043 | Potato | mitochondrion, nucleus | 37.47 | 32.35 |
| TraesCS2B01G418900.1 | Wheat | cytosol, mitochondrion | 35.77 | 31.96 |
| CDY43103 | Canola | cytosol | 28.47 | 31.79 |
| TraesCS2D01G398300.1 | Wheat | cytosol, mitochondrion | 35.52 | 31.6 |
| CDX73724 | Canola | mitochondrion | 9.98 | 31.54 |
| Zm00001d026084_P001 | Maize | mitochondrion | 37.71 | 31.25 |
| CDY41368 | Canola | mitochondrion, plastid | 31.87 | 31.19 |
| CDY29768 | Canola | cytosol | 12.65 | 31.14 |
| CDX82400 | Canola | cytosol | 28.22 | 31.1 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 31.87 | 30.97 |
| CDX76341 | Canola | mitochondrion, plastid | 31.63 | 30.95 |
| CDX75883 | Canola | cytosol | 28.22 | 30.93 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 27.25 | 30.77 |
| CDY41252 | Canola | cytosol, mitochondrion | 36.5 | 30.74 |
| CDX92076 | Canola | cytosol | 28.47 | 30.23 |
| CDX94150 | Canola | nucleus | 34.06 | 30.17 |
| CDY53133 | Canola | nucleus | 35.52 | 30.04 |
| CDY68636 | Canola | cytosol | 28.22 | 29.82 |
| CDX98786 | Canola | nucleus | 34.06 | 29.47 |
| CDY67178 | Canola | cytosol, mitochondrion | 27.74 | 29.38 |
| CDX78003 | Canola | mitochondrion | 10.71 | 28.95 |
| CDY45643 | Canola | cytosol | 22.63 | 28.53 |
| CDX70272 | Canola | cytosol, mitochondrion | 19.22 | 26.96 |
| CDX98787 | Canola | mitochondrion | 19.22 | 26.69 |
| CDY41423 | Canola | cytosol, mitochondrion | 18.98 | 26.62 |
| CDY72577 | Canola | cytosol, mitochondrion | 18.73 | 26.55 |
| CDY47784 | Canola | mitochondrion | 25.06 | 26.55 |
| CDY30233 | Canola | mitochondrion | 24.57 | 26.03 |
| CDY50677 | Canola | nucleus | 22.63 | 25.27 |
| CDY36861 | Canola | nucleus | 22.87 | 25.13 |
| CDY14162 | Canola | endoplasmic reticulum | 19.46 | 23.88 |
| CDY04907 | Canola | endoplasmic reticulum | 19.46 | 23.88 |
| CDY64325 | Canola | cytosol | 21.17 | 23.32 |
| CDY41417 | Canola | mitochondrion | 15.57 | 21.4 |
| CDX85648 | Canola | nucleus | 19.46 | 20.25 |
| CDX91120 | Canola | nucleus | 17.27 | 18.93 |
| CDX70505 | Canola | nucleus | 19.22 | 17.71 |
| CDX78523 | Canola | nucleus | 18.98 | 17.49 |
| CDX83805 | Canola | cytosol, mitochondrion | 17.76 | 13.08 |
| CDY41676 | Canola | cytosol, plastid | 17.27 | 12.35 |
| CDY19251 | Canola | cytosol, mitochondrion | 16.79 | 12.32 |
| CDY67405 | Canola | cytosol | 17.27 | 12.26 |
| CDY26720 | Canola | cytosol, mitochondrion | 16.79 | 12.23 |
| CDX75112 | Canola | cytosol | 3.89 | 11.51 |
| CDY45197 | Canola | nucleus, plastid | 16.06 | 11.32 |
| CDX96693 | Canola | nucleus | 18.49 | 11.29 |
| CDY17427 | Canola | cytosol, plastid | 15.57 | 11.29 |
| CDY04137 | Canola | cytosol, plastid | 15.33 | 11.19 |
| CDY04138 | Canola | cytosol, plastid | 15.09 | 11.05 |
| CDY03037 | Canola | cytosol | 15.33 | 10.9 |
| CDY49085 | Canola | cytosol | 15.57 | 10.44 |
| CDX83739 | Canola | nucleus | 18.49 | 10.28 |
| CDY62588 | Canola | nucleus | 17.76 | 9.85 |
| CDY39317 | Canola | cytosol | 14.36 | 9.72 |
| CDY44186 | Canola | nucleus, plastid | 17.03 | 9.58 |
| CDY29389 | Canola | nucleus, plastid | 17.27 | 9.49 |
Protein Annotations
| EnsemblPlants:CDY00251 | EnsemblPlantsGene:GSBRNA2T00109803001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF11 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDY00251 | ProteinID:CDY00251.1 | SEG:seg | UniParc:UPI0004EDF5AC |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA06g21520D
Coordinates
chrLK031917:-:418476..421008
Molecular Weight (calculated)
45974.6 Da
IEP (calculated)
10.872
GRAVY (calculated)
-0.856
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFGRLFGS KKQDSSTNRR RWSFTTRSSK PASSSSSKRR SYPTEAPSVN EEESGDKHAI AVAAATAAVA EAALAAAHAA AEVVRLTSGT GGRNGGGSNR
101: RWALEYLAAV KIQSAFRGYL WSQLVWYIYM KYKNTQSARR ALRALKALVK LQALVRGHIV RKQTADMFRR MQTLVRLQAQ ARTRASRSSH SSASFHSSTA
201: LLFPSSTPSP RSLHTRSLSN AEVIPMDHRG HSKRVDWQTE EDEDKILEVD TWKPRLHHPK PLRSERNNES PRKRQQSLLA PRSTENSPQV GSSGSRRRTP
301: FTPTTTRSEY SWGCNNYYYS GYHPNYMANT ESYKAKVRSQ SAPKQRLEVS NETSGYKKSV QGQYYYYTAV AEESLDAGSP GYYGGEGGGG ASERLNRNQS
401: EKTRMRSSFL V
101: RWALEYLAAV KIQSAFRGYL WSQLVWYIYM KYKNTQSARR ALRALKALVK LQALVRGHIV RKQTADMFRR MQTLVRLQAQ ARTRASRSSH SSASFHSSTA
201: LLFPSSTPSP RSLHTRSLSN AEVIPMDHRG HSKRVDWQTE EDEDKILEVD TWKPRLHHPK PLRSERNNES PRKRQQSLLA PRSTENSPQV GSSGSRRRTP
301: FTPTTTRSEY SWGCNNYYYS GYHPNYMANT ESYKAKVRSQ SAPKQRLEVS NETSGYKKSV QGQYYYYTAV AEESLDAGSP GYYGGEGGGG ASERLNRNQS
401: EKTRMRSSFL V
001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
Arabidopsis Description
IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.