CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85648	Canola	nucleus	84.0	79.75
CDX70505	Canola	nucleus	77.87	65.47
CDX78523	Canola	nucleus	77.33	65.02
AT5G13460.1	Thale cress	nucleus	75.47	63.88
CDX90650	Canola	mitochondrion	9.87	35.92
KRH39865	Soybean	nucleus	44.53	35.61
KRH23930	Soybean	nucleus	42.93	35.0
CDY29016	Canola	mitochondrion	9.6	34.95
KRH29958	Soybean	cytosol, mitochondrion	42.13	34.57
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	43.2	34.54
KRH63082	Soybean	cytosol	40.53	33.78
PGSC0003DMT400017589	Potato	cytosol, plastid	37.33	32.56
Solyc01g088250.2.1	Tomato	cytosol, plastid	38.93	31.88
CDY72577	Canola	cytosol, mitochondrion	21.87	28.28
CDX70272	Canola	cytosol, mitochondrion	21.87	27.99
CDY41423	Canola	cytosol, mitochondrion	21.07	26.96
CDX73724	Canola	mitochondrion	9.33	26.92
CDY04907	Canola	endoplasmic reticulum	23.73	26.57
CDY14162	Canola	endoplasmic reticulum	23.73	26.57
CDY29768	Canola	cytosol	11.2	25.15
CDY53440	Canola	mitochondrion	18.93	24.48
CDY46537	Canola	cytosol, mitochondrion	18.67	24.14
CDY41417	Canola	mitochondrion	19.2	24.08
CDX78003	Canola	mitochondrion	9.6	23.68
CDY45643	Canola	cytosol	18.13	20.86
GSMUA_Achr3P17450_001	Banana	nucleus	24.0	20.04
CDX75883	Canola	cytosol	20.0	20.0
CDX82400	Canola	cytosol	19.47	19.57
CDY43103	Canola	cytosol	18.93	19.29
TraesCS5A01G163000.1	Wheat	nucleus	24.0	18.91
CDX78285	Canola	plastid	17.33	18.9
CDX92076	Canola	cytosol	19.47	18.86
CDY68636	Canola	cytosol	19.47	18.77
CDX98994	Canola	mitochondrion	17.6	18.64
CDX70019	Canola	cytosol, mitochondrion	17.6	18.64
CDY67178	Canola	cytosol, mitochondrion	19.2	18.56
TraesCS5D01G168000.2	Wheat	nucleus	23.73	18.54
TraesCS5B01G160400.1	Wheat	cytosol	23.2	18.28
Zm00001d029197_P001	Maize	nucleus	22.93	18.07
EER94844	Sorghum	cytosol	24.0	18.04
CDY00253	Canola	plastid	18.93	18.02
Os03t0355700-00	Rice	cytosol	21.6	17.96
CDY50677	Canola	nucleus	17.6	17.93
CDY36861	Canola	nucleus	17.87	17.91
CDX86928	Canola	mitochondrion, plastid	18.67	17.77
CDY00251	Canola	plastid	18.93	17.27
CDX81042	Canola	plastid	17.6	17.05
CDY64325	Canola	cytosol	16.53	16.62
CDY47784	Canola	mitochondrion	16.8	16.24
CDY41368	Canola	mitochondrion, plastid	18.13	16.19
CDY30233	Canola	mitochondrion	16.53	15.98
HORVU5Hr1G050840.5	Barley	cytosol, plastid	22.93	15.47
CDX76341	Canola	mitochondrion, plastid	17.07	15.24
CDX98787	Canola	mitochondrion	12.0	15.2
CDY53133	Canola	nucleus	19.47	15.02
CDX94150	Canola	nucleus	18.4	14.87
CDY41252	Canola	cytosol, mitochondrion	19.2	14.75
CDX98786	Canola	nucleus	18.67	14.74
CDX83805	Canola	cytosol, mitochondrion	20.27	13.62
CDY19251	Canola	cytosol, mitochondrion	19.73	13.21
CDY26720	Canola	cytosol, mitochondrion	19.47	12.94
CDY67405	Canola	cytosol	19.47	12.61
CDY41676	Canola	cytosol, plastid	18.13	11.83
CDX96693	Canola	nucleus	20.53	11.44
CDY45197	Canola	nucleus, plastid	17.6	11.32
CDY03037	Canola	cytosol	17.33	11.25
CDY04138	Canola	cytosol, plastid	16.53	11.05
CDY04137	Canola	cytosol, plastid	16.53	11.01
CDY17427	Canola	cytosol, plastid	16.53	10.93
CDY44186	Canola	nucleus, plastid	18.13	9.3
CDX83739	Canola	nucleus	18.13	9.2
CDY29389	Canola	nucleus, plastid	18.13	9.09
CDY62588	Canola	nucleus	17.87	9.04
CDY39317	Canola	cytosol	13.87	8.57
CDY49085	Canola	cytosol	13.87	8.48
CDX75112	Canola	cytosol	1.87	5.04

Protein Annotations

EnsemblPlants:CDX91120	EnsemblPlantsGene:GSBRNA2T00151905001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF35	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:CDX91120	ProteinID:CDX91120.1	SEG:seg	SMART:SM00015
UniParc:UPI0004EE558D	MapMan:35.1	:	:	:	:

Description

BnaC02g04770D

Coordinates

chrLK031865:-:858137..860027

Molecular Weight (calculated)

43530.3 Da

IEP (calculated)

10.556

GRAVY (calculated)

-0.873

Length

375 amino acids

Sequence
(BLAST)

001: MGKKKGLFTI LKRIFISESH SDKKERRRRW TFWKLKVNKR LPSITAPPEN GTRHEEHKEE SVSDVDEVSQ VSCSGQLDSI EKIVTGDLVA QYQMFLNGEE
101: EVLASTRIQT AFRGYLARKA LRALKGIVKL QAYIRGRSVR RQAMTTLKRL QSVMNIQSQV CGKRTQLPRC NQRDYDEDCK KMFSDNILKV DTNGHKRWDD
201: SLLTKEEAKA VVMSKKEAEL RRERIKEYAV THRKSVESYQ RRSSWLEEWV GIQRTKSKEL EDLNLSLKPK PKPKDEMLNK TPRRFLTKNN NNHRRQVSIS
301: EEKEQNPGGA VAVVTPTYMV ATESAKAKSR SLMSSPRIRS RSFDTQLESY SPYKNKMCLK SSVMNHTLLT SYTYD

Best Arabidopsis Sequence Match ( AT5G13460.1 )
(BLAST)

001: MAKKKGLFTV LKRIFISEVN SEKKEKRRKW TFWKLRIKKR LPSITAPPEH RTSHESHEEQ KEEIVSDVGE ISQVSCSRQL DSIEESKGST SPETADLVVQ
101: YQMFLNRQEE VLAATRIQTA FRGHLARKAL RALKGIVKLQ AYIRGRAVRR QAMTTLKCLQ SVVNIQSQVC GKRTQIPGGV HRDYEESNIF NDNILKVDTN
201: GQKRWDDSLL TKEEKEAVVM SKKEASLRRE RIKEYAVTHR KSAESYQKRS NTKWKYWLDE WVDTQLTKSK ELEDLDFSSK TKPKDETLNE KQLKTPRNSS
301: PRRLVNNHRR QVSIGEDEQS PAAVTITTPT YMVATESAKA KSRSLSSPRI RPRSFDTQSE SYSPYKNKLC LTTSMMSEAP SKVRIANNGS NTRPSAYQQR
401: SPGLRGFNIG PLKSCNNNNT LLNDLSINSE RSLPSWNKQS SLR

Arabidopsis Description

IQD11IQ-domain 11 [Source:UniProtKB/TrEMBL;Acc:Q9LYR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.