Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78285 | Canola | plastid | 87.08 | 97.97 |
| CDX98994 | Canola | mitochondrion | 75.45 | 82.49 |
| CDX70019 | Canola | cytosol, mitochondrion | 74.94 | 81.92 |
| AT5G07240.2 | Thale cress | plastid | 72.35 | 62.64 |
| CDY00253 | Canola | plastid | 60.47 | 59.39 |
| CDX86928 | Canola | mitochondrion, plastid | 60.21 | 59.14 |
| CDY00251 | Canola | plastid | 60.47 | 56.93 |
| CDX90650 | Canola | mitochondrion | 11.11 | 41.75 |
| CDY29016 | Canola | mitochondrion | 10.85 | 40.78 |
| KRG91452 | Soybean | cytosol | 46.51 | 39.47 |
| KRH09113 | Soybean | cytosol | 48.32 | 39.2 |
| KRH35361 | Soybean | cytosol, mitochondrion | 46.51 | 38.79 |
| KRH38565 | Soybean | cytosol | 47.8 | 38.38 |
| GSMUA_Achr8P11920_001 | Banana | cytosol | 34.88 | 37.6 |
| GSMUA_Achr3P18210_001 | Banana | cytosol, mitochondrion | 36.95 | 33.33 |
| GSMUA_Achr5P13660_001 | Banana | cytosol, mitochondrion | 37.21 | 32.88 |
| GSMUA_Achr5P20090_001 | Banana | cytosol, mitochondrion | 38.5 | 32.46 |
| VIT_16s0100g00620.t01 | Wine grape | cytosol | 27.65 | 32.13 |
| EES12687 | Sorghum | cytosol, mitochondrion | 38.76 | 32.12 |
| Solyc03g026110.2.1 | Tomato | cytosol, mitochondrion | 40.31 | 32.1 |
| CDY46537 | Canola | cytosol, mitochondrion | 24.03 | 32.07 |
| Os04t0569900-01 | Rice | cytosol, mitochondrion | 37.98 | 31.68 |
| CDX73724 | Canola | mitochondrion | 10.59 | 31.54 |
| Zm00001d002630_P002 | Maize | mitochondrion | 37.21 | 31.51 |
| CDY53440 | Canola | mitochondrion | 23.51 | 31.38 |
| TraesCS2B01G418900.1 | Wheat | cytosol, mitochondrion | 37.21 | 31.3 |
| TraesCS2D01G398300.1 | Wheat | cytosol, mitochondrion | 37.21 | 31.17 |
| PGSC0003DMT400037043 | Potato | mitochondrion, nucleus | 37.98 | 30.88 |
| CDY29768 | Canola | cytosol | 13.18 | 30.54 |
| CDY43103 | Canola | cytosol | 28.94 | 30.43 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 28.42 | 30.22 |
| Zm00001d026084_P001 | Maize | mitochondrion | 37.73 | 29.44 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 32.04 | 29.31 |
| CDY41252 | Canola | cytosol, mitochondrion | 36.95 | 29.3 |
| CDX82400 | Canola | cytosol | 27.65 | 28.69 |
| CDX92076 | Canola | cytosol | 28.68 | 28.68 |
| CDY53133 | Canola | nucleus | 35.92 | 28.6 |
| CDX75883 | Canola | cytosol | 27.65 | 28.53 |
| CDY45643 | Canola | cytosol | 24.03 | 28.53 |
| CDX78003 | Canola | mitochondrion | 11.11 | 28.29 |
| CDY41368 | Canola | mitochondrion, plastid | 30.49 | 28.1 |
| CDY68636 | Canola | cytosol | 28.17 | 28.02 |
| CDY67178 | Canola | cytosol, mitochondrion | 27.65 | 27.58 |
| CDX94150 | Canola | nucleus | 32.56 | 27.16 |
| CDX76341 | Canola | mitochondrion, plastid | 29.2 | 26.9 |
| CDY47784 | Canola | mitochondrion | 26.61 | 26.55 |
| CDX98786 | Canola | nucleus | 32.56 | 26.53 |
| CDY30233 | Canola | mitochondrion | 26.36 | 26.29 |
| CDY50677 | Canola | nucleus | 24.03 | 25.27 |
| CDX70272 | Canola | cytosol, mitochondrion | 19.12 | 25.26 |
| CDY36861 | Canola | nucleus | 24.29 | 25.13 |
| CDY72577 | Canola | cytosol, mitochondrion | 18.6 | 24.83 |
| CDY41423 | Canola | cytosol, mitochondrion | 18.6 | 24.57 |
| CDX98787 | Canola | mitochondrion | 18.09 | 23.65 |
| CDY64325 | Canola | cytosol | 21.96 | 22.79 |
| CDY14162 | Canola | endoplasmic reticulum | 19.64 | 22.69 |
| CDY04907 | Canola | endoplasmic reticulum | 19.64 | 22.69 |
| CDY41417 | Canola | mitochondrion | 15.25 | 19.73 |
| CDX85648 | Canola | nucleus | 19.12 | 18.73 |
| CDX91120 | Canola | nucleus | 17.05 | 17.6 |
| CDX70505 | Canola | nucleus | 17.83 | 15.47 |
| CDX78523 | Canola | nucleus | 17.83 | 15.47 |
| CDX83805 | Canola | cytosol, mitochondrion | 17.57 | 12.19 |
| CDY67405 | Canola | cytosol | 18.09 | 12.09 |
| CDY41676 | Canola | cytosol, plastid | 17.83 | 12.0 |
| CDY19251 | Canola | cytosol, mitochondrion | 16.54 | 11.43 |
| CDY04137 | Canola | cytosol, plastid | 16.54 | 11.37 |
| CDY26720 | Canola | cytosol, mitochondrion | 16.54 | 11.35 |
| CDY04138 | Canola | cytosol, plastid | 16.28 | 11.23 |
| CDY17427 | Canola | cytosol, plastid | 16.28 | 11.11 |
| CDY45197 | Canola | nucleus, plastid | 16.54 | 10.98 |
| CDY03037 | Canola | cytosol | 16.28 | 10.9 |
| CDX96693 | Canola | nucleus | 18.09 | 10.4 |
| CDY49085 | Canola | cytosol | 15.25 | 9.62 |
| CDX75112 | Canola | cytosol | 3.36 | 9.35 |
| CDX83739 | Canola | nucleus | 17.05 | 8.93 |
| CDY39317 | Canola | cytosol | 13.95 | 8.9 |
| CDY62588 | Canola | nucleus | 16.54 | 8.64 |
| CDY44186 | Canola | nucleus, plastid | 16.28 | 8.62 |
| CDY29389 | Canola | nucleus, plastid | 16.28 | 8.42 |
Protein Annotations
| Gene3D:1.20.5.190 | MapMan:35.2 | EnsemblPlants:CDX81042 | ProteinID:CDX81042 | ProteinID:CDX81042.1 | InterPro:DUF4005 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00134478001 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF11 | SMART:SM00015 |
| UniParc:UPI0004EDC1C5 | SEG:seg | : | : | : | : |
Description
BnaC03g02960D
Coordinates
chrLK031823:+:1435887..1437676
Molecular Weight (calculated)
43258.7 Da
IEP (calculated)
10.685
GRAVY (calculated)
-0.790
Length
387 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFRRLFGS KKQEKTTHTK NKSKKWSFTT RSSNPTSSSH PSKRRTDEEI LDADKHAIAV AAATAAVAEA ALAAAHAAAE VVRLTGRGGG RTSSVTQANR
101: NNRRLAQEYV AAGKIQSAFR GYLARRALRA LKALVKLQAL VKGHIVRKQT ADMLRRMQTL VRLQARARAS RSSHVPPSPH SLHARCVSEA EYSKVIAMDH
201: HRSLWNAPQY SEDNDKILEV DTWKPHFASY YHKESSPSKR GSLPTSPQVR SRPGSSSGGG SRRRTPFTPT RSEYEYYSGY YPNYMANTES YRAKVRSQSA
301: PRQRLHELSS ESGGYKRSVQ GQYYYYTAAA ERSFDQRSYL GSDPNLFLVV EGMCKSDTDT QSTDSDQSLL RNFLLTRSYG TDLVPTG
101: NNRRLAQEYV AAGKIQSAFR GYLARRALRA LKALVKLQAL VKGHIVRKQT ADMLRRMQTL VRLQARARAS RSSHVPPSPH SLHARCVSEA EYSKVIAMDH
201: HRSLWNAPQY SEDNDKILEV DTWKPHFASY YHKESSPSKR GSLPTSPQVR SRPGSSSGGG SRRRTPFTPT RSEYEYYSGY YPNYMANTES YRAKVRSQSA
301: PRQRLHELSS ESGGYKRSVQ GQYYYYTAAA ERSFDQRSYL GSDPNLFLVV EGMCKSDTDT QSTDSDQSLL RNFLLTRSYG TDLVPTG
001: MYHTLASPFP IVSSFLFVLV KNKKNNKKNL NRRKFRQEFS SYNELSMGFF GRLFGSKKQE KATPNRRRWS FATRSSHPEN DSSSHSSKRR GDEDVLNGDK
101: HAIAVAAATA AVAEAALAAA RAAAEVVRLT NGGRNSSVKQ ISRSNRRWSQ EYKAAMKIQS AFRGYLARRA LRALKALVKL QALVKGHIVR KQTADMLRRM
201: QTLVRLQARA RASRSSHVSD SSHPPTLMIP SSPQSFHARC VSEAEYSKVI AMDHHHNNHR SPMGSSRLLD QWRTEESLWS APKYNEDDDK ILEVDTWKPH
301: FRESPRKRGS LVVPTSVENS PQLRSRTGSS SGGSRRKTPF TPARSEYEYY SGYHPNYMAN TESYKAKVRS QSAPRQRLQD LPSESGYKRS IQGQYYYYTP
401: AAERSFDQRS DNGIAGYRGV SDGLDRNQSD KSKMYTSFFS SNPLFFQ
101: HAIAVAAATA AVAEAALAAA RAAAEVVRLT NGGRNSSVKQ ISRSNRRWSQ EYKAAMKIQS AFRGYLARRA LRALKALVKL QALVKGHIVR KQTADMLRRM
201: QTLVRLQARA RASRSSHVSD SSHPPTLMIP SSPQSFHARC VSEAEYSKVI AMDHHHNNHR SPMGSSRLLD QWRTEESLWS APKYNEDDDK ILEVDTWKPH
301: FRESPRKRGS LVVPTSVENS PQLRSRTGSS SGGSRRKTPF TPARSEYEYY SGYHPNYMAN TESYKAKVRS QSAPRQRLQD LPSESGYKRS IQGQYYYYTP
401: AAERSFDQRS DNGIAGYRGV SDGLDRNQSD KSKMYTSFFS SNPLFFQ
Arabidopsis Description
IQD24IQ-domain 24 [Source:TAIR;Acc:AT5G07240]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.