CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70019	Canola	cytosol, mitochondrion	98.02	98.02
Bra009281.1-P	Field mustard	mitochondrion	97.46	97.46
CDX78285	Canola	plastid	80.79	83.14
CDX81042	Canola	plastid	82.49	75.45
AT5G07240.2	Thale cress	plastid	81.64	64.65
CDY00253	Canola	plastid	67.8	60.91
CDX86928	Canola	mitochondrion, plastid	67.51	60.66
CDY00251	Canola	plastid	67.51	58.15
CDX90650	Canola	mitochondrion	12.99	44.66
CDY29016	Canola	mitochondrion	12.71	43.69
KRH09113	Soybean	cytosol	53.39	39.62
KRG91452	Soybean	cytosol	50.56	39.25
KRH38565	Soybean	cytosol	53.39	39.21
KRH35361	Soybean	cytosol, mitochondrion	50.85	38.79
GSMUA_Achr8P11920_001	Banana	cytosol	37.85	37.33
CDX73724	Canola	mitochondrion	12.43	33.85
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	40.68	33.57
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	41.24	33.33
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	45.2	32.92
VIT_16s0100g00620.t01	Wine grape	cytosol	30.79	32.73
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	42.37	32.68
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	42.94	31.93
CDY46537	Canola	cytosol, mitochondrion	25.99	31.72
EES12687	Sorghum	cytosol, mitochondrion	41.53	31.48
Os04t0569900-01	Rice	cytosol, mitochondrion	41.24	31.47
CDY53440	Canola	mitochondrion	25.71	31.38
Zm00001d002630_P002	Maize	mitochondrion	40.11	31.07
CDX78003	Canola	mitochondrion	13.28	30.92
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	40.11	30.87
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	40.11	30.74
CDY43103	Canola	cytosol	31.92	30.71
CDY41252	Canola	cytosol, mitochondrion	41.53	30.12
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	35.88	30.02
CDY53133	Canola	nucleus	40.96	29.84
HORVU0Hr1G005320.2	Barley	cytosol	30.51	29.67
CDY29768	Canola	cytosol	13.84	29.34
Zm00001d026084_P001	Maize	mitochondrion	40.96	29.23
CDX82400	Canola	cytosol	30.51	28.95
CDY41368	Canola	mitochondrion, plastid	34.18	28.81
CDX75883	Canola	cytosol	30.51	28.8
CDX92076	Canola	cytosol	31.36	28.68
CDY45643	Canola	cytosol	25.99	28.22
CDY68636	Canola	cytosol	30.79	28.02
CDX94150	Canola	nucleus	36.72	28.02
CDX76341	Canola	mitochondrion, plastid	32.77	27.62
CDY67178	Canola	cytosol, mitochondrion	30.23	27.58
CDX98786	Canola	nucleus	36.44	27.16
CDY47784	Canola	mitochondrion	29.66	27.06
CDY30233	Canola	mitochondrion	29.1	26.55
CDX70272	Canola	cytosol, mitochondrion	20.9	25.26
CDY72577	Canola	cytosol, mitochondrion	20.62	25.17
CDY41423	Canola	cytosol, mitochondrion	20.62	24.91
CDX98787	Canola	mitochondrion	20.62	24.66
CDY36861	Canola	nucleus	25.42	24.06
CDY50677	Canola	nucleus	24.86	23.91
CDY14162	Canola	endoplasmic reticulum	21.47	22.69
CDY04907	Canola	endoplasmic reticulum	21.47	22.69
CDY64325	Canola	cytosol	23.45	22.25
CDY41417	Canola	mitochondrion	16.95	20.07
CDX85648	Canola	nucleus	20.9	18.73
CDX91120	Canola	nucleus	18.64	17.6
CDX78523	Canola	nucleus	20.06	15.92
CDX70505	Canola	nucleus	19.77	15.7
CDY41676	Canola	cytosol, plastid	21.47	13.22
CDY67405	Canola	cytosol	21.19	12.95
CDX83805	Canola	cytosol, mitochondrion	20.34	12.9
CDY04137	Canola	cytosol, plastid	19.49	12.26
CDY45197	Canola	nucleus, plastid	20.06	12.18
CDY04138	Canola	cytosol, plastid	19.21	12.12
CDY19251	Canola	cytosol, mitochondrion	18.64	11.79
CDY03037	Canola	cytosol	19.21	11.76
CDY26720	Canola	cytosol, mitochondrion	18.64	11.7
CDY17427	Canola	cytosol, plastid	18.64	11.64
CDX96693	Canola	nucleus	21.19	11.14
CDX75112	Canola	cytosol	3.95	10.07
CDY49085	Canola	cytosol	17.23	9.95
CDX83739	Canola	nucleus	20.06	9.61
CDY39317	Canola	cytosol	16.1	9.39
CDY62588	Canola	nucleus	19.49	9.31
CDY44186	Canola	nucleus, plastid	19.21	9.3
CDY29389	Canola	nucleus, plastid	19.21	9.09

Protein Annotations

EnsemblPlants:CDX98994	EnsemblPlantsGene:GSBRNA2T00107114001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	ProteinID:CDX98994	ProteinID:CDX98994.1	SEG:seg
SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI0004EAB5B1	MapMan:35.2	:	:

Description

BnaC09g48410D

Coordinates

chrLK031907:-:1048753..1050586

Molecular Weight (calculated)

39759.5 Da

IEP (calculated)

11.168

GRAVY (calculated)

-0.835

Length

354 amino acids

Sequence
(BLAST)

001: MGFFGRLFGS KKKQEKSSLT NNNRRKWSFT ARSSNPATAL SASSSHPSKR RSDEGILDAN QHAIAVAAAT AAVAEAALAA AHAAAEVVRL TGRGSGRTSS
101: VNQTNRNNRR WGQEYAAAIK IQSAFRGYLA RRALRALKAL VKLQALVKGH IVRKQTADML RRMQTLVRLQ ARARASRSSH VSESLSEAEY IKLIAMDHHH
201: NHRSQMGSSR WNAPLYNEDN DKILEVDTWK PHFPSYHKES PRKRGSLVVP TSVENSPQVR SRPGSSSGGG SRRRTPFTPT RSEYEYYSGY HPNYMANTES
301: YRAKVRSQSA PRQRLREFSS ESGYKRSVQG QYYYYTAAAE RSFDQRSDYG GVYF

Best Arabidopsis Sequence Match ( AT5G07240.1 )
(BLAST)

001: MGFFGRLFGS KKQEKATPNR RRWSFATRSS HPENDSSSHS SKRRGDEDVL NGDKHAIAVA AATAAVAEAA LAAARAAAEV VRLTNGGRNS SVKQISRSNR
101: RWSQEYKAAM KIQSAFRGYL ARRALRALKA LVKLQALVKG HIVRKQTADM LRRMQTLVRL QARARASRSS HVSDSSHPPT LMIPSSPQSF HARCVSEAEY
201: SKVIAMDHHH NNHRSPMGSS RLLDQWRTEE SLWSAPKYNE DDDKILEVDT WKPHFRESPR KRGSLVVPTS VENSPQLRSR TGSSSGGSRR KTPFTPARSE
301: YEYYSGYHPN YMANTESYKA KVRSQSAPRQ RLQDLPSESG YKRSIQGQYY YYTPAAERSF DQRSDNGIAG YRGVSDGLDR NQSDKSKMYT SFFSSNPLFF
401: Q

Arabidopsis Description

IQD24IQ-domain 24 [Source:TAIR;Acc:AT5G07240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.