CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26720	Canola	cytosol, mitochondrion	82.44	81.56
CDY19251	Canola	cytosol, mitochondrion	81.72	81.43
Bra016536.1-P	Field mustard	nucleus	95.52	79.2
CDX96693	Canola	nucleus	95.52	79.2
AT1G18840.1	Thale cress	cytosol	75.99	74.13
Solyc02g087760.2.1	Tomato	nucleus	34.95	35.07
CDX90650	Canola	mitochondrion	6.45	34.95
PGSC0003DMT400003322	Potato	cytosol	34.95	34.95
CDY29016	Canola	mitochondrion	6.27	33.98
CDY41676	Canola	cytosol, plastid	31.18	30.26
CDY67405	Canola	cytosol	31.36	30.22
CDY45197	Canola	nucleus, plastid	30.82	29.5
CDY17427	Canola	cytosol, plastid	29.21	28.75
CDY04137	Canola	cytosol, plastid	28.67	28.42
CDY04138	Canola	cytosol, plastid	28.49	28.34
CDY03037	Canola	cytosol	29.21	28.2
CDX73724	Canola	mitochondrion	6.45	27.69
CDX78003	Canola	mitochondrion	6.81	25.0
CDY29768	Canola	cytosol	7.35	24.55
CDY53440	Canola	mitochondrion	12.54	24.14
CDY46537	Canola	cytosol, mitochondrion	12.54	24.14
CDY39317	Canola	cytosol	26.16	24.05
CDY49085	Canola	cytosol	26.16	23.82
CDY50677	Canola	nucleus	14.34	21.74
CDY43103	Canola	cytosol	14.16	21.47
CDY36861	Canola	nucleus	14.16	21.12
CDY45643	Canola	cytosol	12.01	20.55
CDX85648	Canola	nucleus	14.52	20.51
CDY67178	Canola	cytosol, mitochondrion	14.16	20.36
CDX98994	Canola	mitochondrion	12.9	20.34
CDY68636	Canola	cytosol	14.16	20.31
CDX75883	Canola	cytosol	13.62	20.27
CDX91120	Canola	nucleus	13.62	20.27
CDX92076	Canola	cytosol	13.98	20.16
CDY64325	Canola	cytosol	13.44	20.11
CDX82400	Canola	cytosol	13.44	20.11
CDX70019	Canola	cytosol, mitochondrion	12.72	20.06
CDX78523	Canola	nucleus	15.59	19.51
CDX70505	Canola	nucleus	15.59	19.51
CDX78285	Canola	plastid	12.01	19.48
CDY00253	Canola	plastid	13.08	18.53
CDX86928	Canola	mitochondrion, plastid	12.9	18.27
CDY00251	Canola	plastid	13.08	17.76
CDX81042	Canola	plastid	12.19	17.57
CDY41368	Canola	mitochondrion, plastid	13.08	17.38
CDX98787	Canola	mitochondrion	9.14	17.23
CDY30233	Canola	mitochondrion	11.83	17.01
CDY41252	Canola	cytosol, mitochondrion	14.7	16.8
CDY47784	Canola	mitochondrion	11.65	16.75
CDY53133	Canola	nucleus	14.52	16.67
CDY72577	Canola	cytosol, mitochondrion	8.6	16.55
CDX76341	Canola	mitochondrion, plastid	12.01	15.95
CDX94150	Canola	nucleus	13.26	15.95
CDX70272	Canola	cytosol, mitochondrion	8.24	15.7
CDX98786	Canola	nucleus	13.26	15.58
CDY41423	Canola	cytosol, mitochondrion	8.06	15.36
CDY41417	Canola	mitochondrion	8.06	15.05
CDY14162	Canola	endoplasmic reticulum	7.89	13.13
CDY04907	Canola	endoplasmic reticulum	7.89	13.13
CDX83739	Canola	nucleus	17.38	13.13
CDY62588	Canola	nucleus	17.38	13.09
CDY44186	Canola	nucleus, plastid	17.03	13.0
CDY29389	Canola	nucleus, plastid	17.38	12.97
CDX75112	Canola	cytosol	1.25	5.04

Protein Annotations

MapMan:35.1	EnsemblPlants:CDX83805	ProteinID:CDX83805	ProteinID:CDX83805.1	InterPro:DUF4005	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00139556001	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF14	SMART:SM00015
SUPFAM:SSF52540	UniParc:UPI0004EE7088	SEG:seg	:	:	:

Description

BnaC08g18400D

Coordinates

chrLK031834:+:552379..555392

Molecular Weight (calculated)

61542.0 Da

IEP (calculated)

9.915

GRAVY (calculated)

-0.706

Length

558 amino acids

Sequence
(BLAST)

001: MGKPARWLKS VLLGKKSSKS SGSKDKERVV NGKEVVVVSK IEESDVVSDL PFFGNATVST SAVVEETQNI ERELVSDDEI QLPEVQVQPT ESPNAASVVI
101: PDDLLSDSDK IQQEIAATTL QAAFRGYLAR RAFWALKGII RLQALIRGHM VRRQAVATLC CVMGIVRLQA LARGKEIRRS DIGVEVHRRC LENKLPEDSV
201: VETHTYLGIK KLTANAFAQK LLASSPNVMP VHLDNDSSSN SIWLENWSAS CFWKPVPQPK KTSVRKTQKK FEGDFAKQKK SVRKVPAPNL DSPSAAAQTS
301: FEFEKPKRSS FRKFSTSQSV ELPPLEEPPQ VDLEKVKRGL RKVHNPVVEN SIQPQPSPEK EIEKPTLALK EPVTVSAFDE EEKETVVEII HTHGPLETNE
401: APPDSPLVNQ IEESQENVMV EEKEDVKEER TPKQKNSAGK ENKKSVKKDS PVTATTTTTQ AAECQESSAP GLPSYMQATK SAKAKLRLQQ GSSSPKQQGA
501: EKATRRYSLP SSGNNARVTS DSPKTTRVSN SGGKTGKKTE KPLAREGNGK TTQVEWKR

Best Arabidopsis Sequence Match ( AT1G18840.2 )
(BLAST)

001: MGKPARWLKS VLLGKKPSKS SGSKDKERIV NGKEVVVISK IEESDVVSDL SSIGNAAVYT SGIVETQNLK HEDVSDDEIQ VSEVQPTDSQ DVASVPDDSL
101: SESEKIQQEI AAVTVQAAYR GYLARRAFKI LKGIIRLQAL IRGHMVRRQA VSTLCCVMGI VRLQALARGR EIRHSDIGVE VQRKCHLHHQ PLENKANSVV
201: DTHSYLGINK LTGNAFAQKL LASSPNVLPL SLDNDSSNSI WLENWSASCF WKPVPQPKKA SLRKSQKKFA SNPQIVEAEF ARPKKSVRKV PSSNLDNSSV
301: AQTSSELEKP KRSFRKVSTS QSVEPLPSMD NPQVDLEKVK RGLRKVHNPV VENSIQPQLV PQIAVEKPNG SLEESVNAFD EEKEDEVAET VVQQPEELIQ
401: THTPLGTNES LDSTLVNQIE ESEENVMAEE KEDVKEERTP KQNHKENSAG KENQKSGKKA SSVTATQTAE FQESGNGNQT SSPGIPSYMQ ATKSAKAKLR
501: LQGSSSPRQL GTTEKASRRY SLPSSGNSAK ITSHSPKTRV SNSSGKSGNK TEKTLLSSRE GNGKATPVEW KR

Arabidopsis Description

IQD30At1g18840 [Source:UniProtKB/TrEMBL;Acc:Q501D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.