Factsheet for Bra016536.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96693	Canola	nucleus	100.0	100.0
CDX83805	Canola	cytosol, mitochondrion	79.2	95.52
Bra025690.1-P	Field mustard	cytosol, mitochondrion	67.76	80.85
AT1G18840.1	Thale cress	cytosol	63.0	74.13
Bra008163.1-P	Field mustard	cytosol	49.33	64.34
Solyc02g087760.2.1	Tomato	nucleus	29.42	35.61
PGSC0003DMT400003322	Potato	cytosol	29.42	35.48
Bra012855.1-P	Field mustard	mitochondrion	5.35	34.95
Bra026581.1-P	Field mustard	cytosol	26.3	30.62
Bra024806.1-P	Field mustard	cytosol, plastid	25.41	29.23
Bra017409.1-P	Field mustard	cytosol, plastid	24.37	29.03
Bra036812.1-P	Field mustard	mitochondrion	5.79	25.32
Bra014304.1-P	Field mustard	cytosol, mitochondrion	10.4	24.14
Bra019653.1-P	Field mustard	cytosol	21.99	23.57
Bra039715.1-P	Field mustard	nucleus, plastid	12.18	22.16
Bra009281.1-P	Field mustard	mitochondrion	11.14	21.19
Bra023414.1-P	Field mustard	nucleus	12.18	20.76
Bra036898.1-P	Field mustard	cytosol	11.14	20.49
Bra001633.1-P	Field mustard	cytosol	11.29	20.38
Bra005929.1-P	Field mustard	plastid	10.25	20.12
Bra022163.1-P	Field mustard	cytosol	11.44	19.9
Bra030407.1-P	Field mustard	cytosol	9.96	19.88
Bra021181.1-P	Field mustard	cytosol	11.44	19.79
Bra006201.1-P	Field mustard	nucleus	13.08	19.69
Bra010055.1-P	Field mustard	plastid	11.29	18.77
Bra024161.1-P	Field mustard	mitochondrion	10.1	17.53
Bra013672.1-P	Field mustard	mitochondrion, nucleus	12.33	16.73
Bra028807.1-P	Field mustard	mitochondrion	9.21	16.32
Bra009498.1-P	Field mustard	cytosol, mitochondrion	9.21	16.23
Bra020822.1-P	Field mustard	mitochondrion, plastid	9.81	15.71
Bra019337.1-P	Field mustard	nucleus	10.7	15.29
Bra016490.1-P	Field mustard	nucleus	15.45	14.07
Bra025777.1-P	Field mustard	nucleus, plastid	14.86	13.44

Protein Annotations

EnsemblPlants:Bra016536.1	EnsemblPlants:Bra016536.1-P	EnsemblPlantsGene:Bra016536	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	PANTHER:PTHR32295	PANTHER:PTHR32295:SF14
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	SUPFAM:SSF52540
UniParc:UPI0002546F36	UniProt:M4DJ58	MapMan:35.1	:	:	:

Description

AT1G18840 (E=4e-188) IQD30 | IQD30; calmodulin binding

Coordinates

chrA08:+:18924407..18928134

Molecular Weight (calculated)

74797.0 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.661

Length

673 amino acids

Sequence
(BLAST)

001: MDKTRADLHS RIRVTIQSVD SISKRIQRRR APVTDLKGFL QGFDKNVESK ARMSIPLSEF IQYRVRKRPQ LKRRIWSELL EETGFGSVDL RSGFIYFCKE
101: VWFCVLVVDI MGKPARWLKS VLLGKKSSKS SGSKDKERVV NGKEVVVVSR IEESDVVSDL PSFGNATVST SSAVVEETQN TEREVVSDDE IQLPESQVLP
201: TESPTAASVV VPDDLLSDSD KIQQEVAATT LQAAFRGYLA RRAFWALKGI IRLQALIRGH MVRRQAVATL CCVMGIVRLQ ALARGKEIRR SDIGVEVHRR
301: CLENKLPEDS VVETHTYLGI KKLTANAFAQ KLLASSPNVM PVHLDNDSSN SIWLENWSAS CFWKPVPQPK KTSVRKTQKK FEGDFAKPKK SVRKVPAPNL
401: DSSSAGAQTA FEFEKPKRSS FRKFSTSQSV ELPPLEEPPQ VDLEKVKRGL RKVHNPVVEN SIQPQPSPEK EIEKPALALK EPVTVSTFDE EEKETVVEIL
501: HTHGPLETNE AAPDSPLVNQ IEESQENVMA EEKEDVKEER TPKQKKSAGK ENKKSVKKDS PVSATTTTQA AECQESSNGN QSSTPGLPSY MQATKSAKAK
601: LRLQQGSSSP KQQGAEKVTR RYSLPSSGNN ARVTSDSPKT TRVSNSGGKT GKKTEKPLGR EGNGKTTQVE WKR

Best Arabidopsis Sequence Match ( AT1G18840.2 )
(BLAST)

001: MGKPARWLKS VLLGKKPSKS SGSKDKERIV NGKEVVVISK IEESDVVSDL SSIGNAAVYT SGIVETQNLK HEDVSDDEIQ VSEVQPTDSQ DVASVPDDSL
101: SESEKIQQEI AAVTVQAAYR GYLARRAFKI LKGIIRLQAL IRGHMVRRQA VSTLCCVMGI VRLQALARGR EIRHSDIGVE VQRKCHLHHQ PLENKANSVV
201: DTHSYLGINK LTGNAFAQKL LASSPNVLPL SLDNDSSNSI WLENWSASCF WKPVPQPKKA SLRKSQKKFA SNPQIVEAEF ARPKKSVRKV PSSNLDNSSV
301: AQTSSELEKP KRSFRKVSTS QSVEPLPSMD NPQVDLEKVK RGLRKVHNPV VENSIQPQLV PQIAVEKPNG SLEESVNAFD EEKEDEVAET VVQQPEELIQ
401: THTPLGTNES LDSTLVNQIE ESEENVMAEE KEDVKEERTP KQNHKENSAG KENQKSGKKA SSVTATQTAE FQESGNGNQT SSPGIPSYMQ ATKSAKAKLR
501: LQGSSSPRQL GTTEKASRRY SLPSSGNSAK ITSHSPKTRV SNSSGKSGNK TEKTLLSSRE GNGKATPVEW KR

Arabidopsis Description

IQD30At1g18840 [Source:UniProtKB/TrEMBL;Acc:Q501D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.