CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005929.1-P	Field mustard	plastid	99.42	99.71
CDX81042	Canola	plastid	97.97	87.08
CDX98994	Canola	mitochondrion	83.14	80.79
CDX70019	Canola	cytosol, mitochondrion	82.85	80.51
AT5G07240.2	Thale cress	plastid	80.23	61.74
CDY00253	Canola	plastid	68.02	59.39
CDX86928	Canola	mitochondrion, plastid	67.73	59.14
CDY00251	Canola	plastid	68.02	56.93
CDX90650	Canola	mitochondrion	12.5	41.75
CDY29016	Canola	mitochondrion	12.21	40.78
KRG91452	Soybean	cytosol	51.74	39.04
KRH09113	Soybean	cytosol	54.07	38.99
KRH35361	Soybean	cytosol, mitochondrion	51.74	38.36
KRH38565	Soybean	cytosol	53.49	38.17
GSMUA_Achr8P11920_001	Banana	cytosol	38.95	37.33
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	41.28	33.1
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	41.28	32.42
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	43.02	32.24
VIT_16s0100g00620.t01	Wine grape	cytosol	31.1	32.13
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	45.35	32.1
CDY46537	Canola	cytosol, mitochondrion	27.03	32.07
EES12687	Sorghum	cytosol, mitochondrion	43.31	31.91
CDY53440	Canola	mitochondrion	26.74	31.72
CDX73724	Canola	mitochondrion	11.92	31.54
Os04t0569900-01	Rice	cytosol, mitochondrion	42.44	31.47
Zm00001d002630_P002	Maize	mitochondrion	41.57	31.29
CDY29768	Canola	cytosol	15.12	31.14
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	41.57	31.09
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	41.57	30.95
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	42.73	30.88
CDY43103	Canola	cytosol	32.85	30.71
HORVU0Hr1G005320.2	Barley	cytosol	31.69	29.95
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	36.05	29.31
Zm00001d026084_P001	Maize	mitochondrion	42.15	29.23
CDX82400	Canola	cytosol	31.4	28.95
CDY41252	Canola	cytosol, mitochondrion	40.99	28.89
CDY45643	Canola	cytosol	27.33	28.83
CDX75883	Canola	cytosol	31.4	28.8
CDX92076	Canola	cytosol	32.27	28.68
CDX78003	Canola	mitochondrion	12.5	28.29
CDY68636	Canola	cytosol	31.98	28.28
CDY53133	Canola	nucleus	39.83	28.19
CDY41368	Canola	mitochondrion, plastid	34.3	28.1
CDY67178	Canola	cytosol, mitochondrion	31.4	27.84
CDX94150	Canola	nucleus	36.34	26.94
CDX76341	Canola	mitochondrion, plastid	32.85	26.9
CDY47784	Canola	mitochondrion	29.94	26.55
CDX98786	Canola	nucleus	36.34	26.32
CDY30233	Canola	mitochondrion	29.65	26.29
CDY50677	Canola	nucleus	27.33	25.54
CDY36861	Canola	nucleus	27.62	25.4
CDX70272	Canola	cytosol, mitochondrion	21.22	24.91
CDY41423	Canola	cytosol, mitochondrion	20.93	24.57
CDY72577	Canola	cytosol, mitochondrion	20.64	24.48
CDX98787	Canola	mitochondrion	20.35	23.65
CDY64325	Canola	cytosol	25.0	23.06
CDY04907	Canola	endoplasmic reticulum	21.8	22.39
CDY14162	Canola	endoplasmic reticulum	21.8	22.39
CDY41417	Canola	mitochondrion	17.15	19.73
CDX85648	Canola	nucleus	21.22	18.48
CDX91120	Canola	nucleus	18.9	17.33
CDX70505	Canola	nucleus	19.77	15.25
CDX78523	Canola	nucleus	19.77	15.25
CDX83805	Canola	cytosol, mitochondrion	19.48	12.01
CDY41676	Canola	cytosol, plastid	19.77	11.83
CDY67405	Canola	cytosol	19.77	11.74
CDY04137	Canola	cytosol, plastid	18.6	11.37
CDY19251	Canola	cytosol, mitochondrion	18.31	11.25
CDY04138	Canola	cytosol, plastid	18.31	11.23
CDY26720	Canola	cytosol, mitochondrion	18.31	11.17
CDY17427	Canola	cytosol, plastid	18.31	11.11
CDY45197	Canola	nucleus, plastid	18.6	10.98
CDY03037	Canola	cytosol	18.02	10.73
CDX96693	Canola	nucleus	20.06	10.25
CDY49085	Canola	cytosol	17.15	9.62
CDX75112	Canola	cytosol	3.78	9.35
CDX83739	Canola	nucleus	19.19	8.93
CDY39317	Canola	cytosol	15.7	8.9
CDY62588	Canola	nucleus	18.6	8.64
CDY44186	Canola	nucleus, plastid	18.31	8.62
CDY29389	Canola	nucleus, plastid	18.31	8.42

Protein Annotations

EnsemblPlants:CDX78285	EnsemblPlantsGene:GSBRNA2T00129632001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR32295
PANTHER:PTHR32295:SF11	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	ProteinID:CDX78285	ProteinID:CDX78285.1
SEG:seg	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI0004EE0623	MapMan:35.2	:

Description

BnaA03g01970D

Coordinates

chrLK031815:+:5530..10584

Molecular Weight (calculated)

38651.4 Da

IEP (calculated)

10.968

GRAVY (calculated)

-0.800

Length

344 amino acids

Sequence
(BLAST)

001: MGFFRRLFGS KKQEKTTHTK NKSKKWSFTT RSSKPASSSH PSKRRTDEEI LDVDKHAIAV AAATAAVAEA ALAAAHAAAE VVRLTGRGGG SVTQANRNNR
101: RLAQEFVAAV KIQSSFRGYL ARRALRALKA LVKLQALVKG HIVRKQTADM LRRMQTLVRL QARARASRSS HVPPSPHSLH ARCVSEAEYS KVIAMDHHRS
201: LWNAPQYSED NDKILEVDTW KPHFASYYHK ESSPSKRGSL PTSPQVRSRP GSSSGGGSRR RTPFTPTRSE YEYYSGYYPN YMANTESYRA KVRSQSAPRQ
301: RLHELSSESG GYKRSVQGQY YYYTAAAERS FDQRSYLSSD PNLF

Best Arabidopsis Sequence Match ( AT5G07240.1 )
(BLAST)

001: MGFFGRLFGS KKQEKATPNR RRWSFATRSS HPENDSSSHS SKRRGDEDVL NGDKHAIAVA AATAAVAEAA LAAARAAAEV VRLTNGGRNS SVKQISRSNR
101: RWSQEYKAAM KIQSAFRGYL ARRALRALKA LVKLQALVKG HIVRKQTADM LRRMQTLVRL QARARASRSS HVSDSSHPPT LMIPSSPQSF HARCVSEAEY
201: SKVIAMDHHH NNHRSPMGSS RLLDQWRTEE SLWSAPKYNE DDDKILEVDT WKPHFRESPR KRGSLVVPTS VENSPQLRSR TGSSSGGSRR KTPFTPARSE
301: YEYYSGYHPN YMANTESYKA KVRSQSAPRQ RLQDLPSESG YKRSIQGQYY YYTPAAERSF DQRSDNGIAG YRGVSDGLDR NQSDKSKMYT SFFSSNPLFF
401: Q

Arabidopsis Description

IQD24IQ-domain 24 [Source:TAIR;Acc:AT5G07240]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.