Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G62070.1 | CDX86457 | AT3G27960.1 | 21798944 |
| AT5G62070.1 | CDY58518 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86928 | Canola | mitochondrion, plastid | 98.73 | 98.73 |
| Bra010055.1-P | Field mustard | plastid | 98.22 | 95.56 |
| CDY00251 | Canola | plastid | 99.24 | 95.13 |
| AT5G62070.1 | Thale cress | cytosol, plastid | 83.76 | 81.89 |
| CDX78285 | Canola | plastid | 59.39 | 68.02 |
| CDX98994 | Canola | mitochondrion | 60.91 | 67.8 |
| CDX70019 | Canola | cytosol, mitochondrion | 60.41 | 67.23 |
| CDX81042 | Canola | plastid | 59.39 | 60.47 |
| CDX90650 | Canola | mitochondrion | 10.91 | 41.75 |
| KRG91452 | Soybean | cytosol | 47.72 | 41.23 |
| KRH09113 | Soybean | cytosol | 49.75 | 41.09 |
| CDY29016 | Canola | mitochondrion | 10.66 | 40.78 |
| KRH35361 | Soybean | cytosol, mitochondrion | 47.97 | 40.73 |
| KRH38565 | Soybean | cytosol | 49.49 | 40.46 |
| GSMUA_Achr8P11920_001 | Banana | cytosol | 36.8 | 40.39 |
| GSMUA_Achr5P13660_001 | Banana | cytosol, mitochondrion | 38.83 | 34.93 |
| VIT_16s0100g00620.t01 | Wine grape | cytosol | 29.44 | 34.83 |
| GSMUA_Achr5P20090_001 | Banana | cytosol, mitochondrion | 39.59 | 33.99 |
| GSMUA_Achr3P18210_001 | Banana | cytosol, mitochondrion | 36.55 | 33.57 |
| Solyc03g026110.2.1 | Tomato | cytosol, mitochondrion | 41.12 | 33.33 |
| EES12687 | Sorghum | cytosol, mitochondrion | 39.34 | 33.19 |
| CDY46537 | Canola | cytosol, mitochondrion | 24.11 | 32.76 |
| Os04t0569900-01 | Rice | cytosol, mitochondrion | 38.58 | 32.76 |
| CDY53440 | Canola | mitochondrion | 23.86 | 32.41 |
| Zm00001d002630_P002 | Maize | mitochondrion | 37.56 | 32.39 |
| PGSC0003DMT400037043 | Potato | mitochondrion, nucleus | 39.09 | 32.35 |
| CDY43103 | Canola | cytosol | 29.7 | 31.79 |
| TraesCS2B01G418900.1 | Wheat | cytosol, mitochondrion | 37.06 | 31.74 |
| CDX73724 | Canola | mitochondrion | 10.41 | 31.54 |
| TraesCS2D01G398300.1 | Wheat | cytosol, mitochondrion | 36.8 | 31.39 |
| CDY29768 | Canola | cytosol | 13.2 | 31.14 |
| CDX82400 | Canola | cytosol | 29.44 | 31.1 |
| Zm00001d026084_P001 | Maize | mitochondrion | 39.09 | 31.05 |
| CDY41368 | Canola | mitochondrion, plastid | 32.99 | 30.95 |
| CDX75883 | Canola | cytosol | 29.44 | 30.93 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 32.99 | 30.73 |
| CDX76341 | Canola | mitochondrion, plastid | 32.74 | 30.71 |
| CDY41252 | Canola | cytosol, mitochondrion | 37.82 | 30.53 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 28.17 | 30.49 |
| CDX92076 | Canola | cytosol | 29.7 | 30.23 |
| CDX94150 | Canola | nucleus | 35.28 | 29.96 |
| CDY53133 | Canola | nucleus | 36.8 | 29.84 |
| CDY68636 | Canola | cytosol | 29.44 | 29.82 |
| CDY67178 | Canola | cytosol, mitochondrion | 28.93 | 29.38 |
| CDX98786 | Canola | nucleus | 35.28 | 29.26 |
| CDX78003 | Canola | mitochondrion | 11.17 | 28.95 |
| CDY45643 | Canola | cytosol | 23.6 | 28.53 |
| CDX70272 | Canola | cytosol, mitochondrion | 20.05 | 26.96 |
| CDY47784 | Canola | mitochondrion | 26.4 | 26.8 |
| CDX98787 | Canola | mitochondrion | 20.05 | 26.69 |
| CDY41423 | Canola | cytosol, mitochondrion | 19.8 | 26.62 |
| CDY72577 | Canola | cytosol, mitochondrion | 19.54 | 26.55 |
| CDY30233 | Canola | mitochondrion | 25.89 | 26.29 |
| CDY50677 | Canola | nucleus | 23.6 | 25.27 |
| CDY36861 | Canola | nucleus | 23.86 | 25.13 |
| CDY04907 | Canola | endoplasmic reticulum | 20.3 | 23.88 |
| CDY14162 | Canola | endoplasmic reticulum | 20.3 | 23.88 |
| CDY64325 | Canola | cytosol | 22.08 | 23.32 |
| CDY41417 | Canola | mitochondrion | 16.24 | 21.4 |
| CDX85648 | Canola | nucleus | 20.3 | 20.25 |
| CDX91120 | Canola | nucleus | 18.02 | 18.93 |
| CDX70505 | Canola | nucleus | 19.8 | 17.49 |
| CDX78523 | Canola | nucleus | 19.54 | 17.26 |
| CDX83805 | Canola | cytosol, mitochondrion | 18.53 | 13.08 |
| CDY41676 | Canola | cytosol, plastid | 18.02 | 12.35 |
| CDY19251 | Canola | cytosol, mitochondrion | 17.51 | 12.32 |
| CDY67405 | Canola | cytosol | 18.02 | 12.26 |
| CDY26720 | Canola | cytosol, mitochondrion | 17.51 | 12.23 |
| CDX75112 | Canola | cytosol | 4.31 | 12.23 |
| CDY45197 | Canola | nucleus, plastid | 16.75 | 11.32 |
| CDX96693 | Canola | nucleus | 19.29 | 11.29 |
| CDY17427 | Canola | cytosol, plastid | 16.24 | 11.29 |
| CDY04137 | Canola | cytosol, plastid | 15.99 | 11.19 |
| CDY04138 | Canola | cytosol, plastid | 15.74 | 11.05 |
| CDY03037 | Canola | cytosol | 15.99 | 10.9 |
| CDY49085 | Canola | cytosol | 16.24 | 10.44 |
| CDX83739 | Canola | nucleus | 19.29 | 10.28 |
| CDY62588 | Canola | nucleus | 18.53 | 9.85 |
| CDY39317 | Canola | cytosol | 14.97 | 9.72 |
| CDY44186 | Canola | nucleus, plastid | 17.77 | 9.58 |
| CDY29389 | Canola | nucleus, plastid | 18.02 | 9.49 |
Protein Annotations
| EnsemblPlants:CDY00253 | EnsemblPlantsGene:GSBRNA2T00109806001 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | InterPro:P-loop_NTPase | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF11 |
| PFAM:PF00612 | PFAM:PF13178 | PFscan:PS50096 | ProteinID:CDY00253 | ProteinID:CDY00253.1 | SEG:seg |
| SMART:SM00015 | SUPFAM:SSF52540 | UniParc:UPI0004EEC465 | MapMan:35.2 | : | : |
Description
BnaA06g21540D
Coordinates
chrLK031917:-:426096..429250
Molecular Weight (calculated)
43844.1 Da
IEP (calculated)
10.962
GRAVY (calculated)
-0.853
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFGRLFGS KKQDSSTNRR RWSFTTRSSK PASSSSSKRR SYPTEAPSVN EEESGDKHAI AVAAATAAVA EAALAAAHAA AEVVRLTSGT GGRNGGGSNR
101: RWALEYLAAV KIQSAFRGYL ARRALRALKA LVKLQALVRG HIVRKQTADM FRRMQTLVRL QAQARTRASR SSHSSASFHS STALLFPSST PSPRSLHTRS
201: LSNAEVIPMD HRGHSKRVDW QTEEDEDKIL EVDTWKPRLH HPKPLRSERN NESPRKRQQS LLAPRSTENS PQVGSSGSRR RTPFTPTTTR SEYSWGCNNY
301: YYSGYHPNYM ANTESYKAKV RSQSAPKQRL EVSNETSGYK KSVQGQYYYY TAVAEESLDV GSPGYYGGEG GGGVSERFNR NQSEKTRMRS SFLV
101: RWALEYLAAV KIQSAFRGYL ARRALRALKA LVKLQALVRG HIVRKQTADM FRRMQTLVRL QAQARTRASR SSHSSASFHS STALLFPSST PSPRSLHTRS
201: LSNAEVIPMD HRGHSKRVDW QTEEDEDKIL EVDTWKPRLH HPKPLRSERN NESPRKRQQS LLAPRSTENS PQVGSSGSRR RTPFTPTTTR SEYSWGCNNY
301: YYSGYHPNYM ANTESYKAKV RSQSAPKQRL EVSNETSGYK KSVQGQYYYY TAVAEESLDV GSPGYYGGEG GGGVSERFNR NQSEKTRMRS SFLV
001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
Arabidopsis Description
IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.