Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G163000.1 | Wheat | nucleus | 96.46 | 97.27 |
| TraesCS5B01G160400.1 | Wheat | cytosol | 96.04 | 96.85 |
| HORVU5Hr1G050840.5 | Barley | cytosol, plastid | 91.04 | 78.6 |
| Os03t0355700-00 | Rice | cytosol | 68.96 | 73.39 |
| Zm00001d029197_P001 | Maize | nucleus | 66.67 | 67.23 |
| EER94844 | Sorghum | cytosol | 69.79 | 67.13 |
| GSMUA_Achr3P17450_001 | Banana | nucleus | 42.71 | 45.66 |
| CDX70272 | Canola | cytosol, mitochondrion | 20.42 | 33.45 |
| CDY41423 | Canola | cytosol, mitochondrion | 20.0 | 32.76 |
| PGSC0003DMT400033127 | Potato | cytosol, mitochondrion | 26.25 | 31.11 |
| CDY72577 | Canola | cytosol, mitochondrion | 18.75 | 31.03 |
| VIT_13s0019g01830.t01 | Wine grape | mitochondrion, nucleus | 30.21 | 30.92 |
| Bra009498.1-P | Field mustard | cytosol, mitochondrion | 24.38 | 30.63 |
| KRH23930 | Soybean | nucleus | 29.17 | 30.43 |
| Bra028807.1-P | Field mustard | mitochondrion | 23.96 | 30.26 |
| KRH33197 | Soybean | cytosol, mitochondrion | 24.58 | 30.26 |
| Solyc04g016480.2.1 | Tomato | mitochondrion, nucleus | 25.62 | 30.0 |
| VIT_08s0007g05960.t01 | Wine grape | cytosol | 26.46 | 29.88 |
| KRH39865 | Soybean | nucleus | 28.75 | 29.42 |
| CDY04907 | Canola | endoplasmic reticulum | 20.0 | 28.66 |
| CDY14162 | Canola | endoplasmic reticulum | 20.0 | 28.66 |
| KRH29958 | Soybean | cytosol, mitochondrion | 26.46 | 27.79 |
| AT5G03960.2 | Thale cress | cytosol, mitochondrion | 23.33 | 27.72 |
| TraesCS1D01G123800.1 | Wheat | cytosol | 26.04 | 27.53 |
| Solyc01g088250.2.1 | Tomato | cytosol, plastid | 25.83 | 27.07 |
| TraesCS2D01G398300.1 | Wheat | cytosol, mitochondrion | 26.04 | 27.06 |
| TraesCS3D01G109900.1 | Wheat | cytosol, mitochondrion | 25.83 | 26.9 |
| KRH63082 | Soybean | cytosol | 25.21 | 26.89 |
| Solyc10g079240.1.1 | Tomato | mitochondrion, nucleus | 23.54 | 26.84 |
| CDY41417 | Canola | mitochondrion | 16.67 | 26.76 |
| Bra023414.1-P | Field mustard | nucleus | 21.67 | 26.33 |
| CDX85648 | Canola | nucleus | 21.67 | 26.33 |
| VIT_08s0007g05980.t01 | Wine grape | cytosol | 24.79 | 26.33 |
| PGSC0003DMT400017589 | Potato | cytosol, plastid | 23.33 | 26.05 |
| CDX78523 | Canola | nucleus | 23.54 | 25.34 |
| CDX70505 | Canola | nucleus | 23.54 | 25.34 |
| Bra006201.1-P | Field mustard | nucleus | 23.54 | 25.28 |
| TraesCS2D01G470000.1 | Wheat | cytosol, mitochondrion | 22.5 | 24.71 |
| AT5G13460.1 | Thale cress | nucleus | 22.5 | 24.38 |
| TraesCS1D01G344200.1 | Wheat | cytosol | 17.29 | 23.99 |
| CDX91120 | Canola | nucleus | 18.54 | 23.73 |
| TraesCS5D01G387500.1 | Wheat | cytosol | 22.08 | 22.89 |
| TraesCS3D01G275900.1 | Wheat | mitochondrion | 17.5 | 22.11 |
| TraesCS7D01G341000.1 | Wheat | cytosol | 19.58 | 21.22 |
| TraesCS4D01G275700.3 | Wheat | cytosol, mitochondrion | 20.62 | 20.5 |
| PGSC0003DMT400021096 | Potato | nucleus | 8.33 | 18.1 |
| TraesCS1D01G361800.3 | Wheat | cytosol, mitochondrion, plastid | 20.0 | 16.58 |
| TraesCS3D01G247300.1 | Wheat | cytosol, plastid | 17.92 | 15.69 |
| TraesCS4D01G327500.1 | Wheat | mitochondrion | 10.42 | 12.59 |
| TraesCS2D01G492600.1 | Wheat | nucleus | 17.71 | 9.87 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G168000.2 | EnsemblPlantsGene:TraesCS5D01G168000 | Gene3D:1.20.5.190 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF41 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr5D:-:262839175..262842150
Molecular Weight (calculated)
53190.1 Da
IEP (calculated)
10.666
GRAVY (calculated)
-0.711
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKKKGWFE RIKRLFISEP KQKPKPDKKV KSKRWLVGKL KTQHSFALPA PEPEPATGQI QIRQAEEEQS KHAVAVALAS AAAAEAAVAA AHAAAEVVRL
101: TGQPSPAPAR EDPASSGHEL FAAVAIQSAY RGYLARRALR ALKGLVRLQA VIRGQAVRRQ TAATLRGLES LVKIQARQRA RVDVEHDHEH DGDGMDALLR
201: RGRELYAAAL QEQQQQNSSG SRGWDGSTLS KEEMGAVMRS REEAAIKRVR ALQYASIQNE KIGIRRQPMS RDEMETLNQR WSWLEEWVGS QPFDKDVAVD
301: VVTHPHPPPP RSRDSLACLE DDDDHDDDGY GRRLGYSSRR SFGRARRTPG RGSVDDGLQA CSPAVAFPGY MASTASAKAK FRSMSTPKER FAVPSDAYSE
401: QCFADRLMSP IPSMSPMPSI ASDMGFARSS RPPVAQRSPR VKGGPMTPSR IRSRRSPSRH SFGSEAALHQ MQLEHYTPIR
101: TGQPSPAPAR EDPASSGHEL FAAVAIQSAY RGYLARRALR ALKGLVRLQA VIRGQAVRRQ TAATLRGLES LVKIQARQRA RVDVEHDHEH DGDGMDALLR
201: RGRELYAAAL QEQQQQNSSG SRGWDGSTLS KEEMGAVMRS REEAAIKRVR ALQYASIQNE KIGIRRQPMS RDEMETLNQR WSWLEEWVGS QPFDKDVAVD
301: VVTHPHPPPP RSRDSLACLE DDDDHDDDGY GRRLGYSSRR SFGRARRTPG RGSVDDGLQA CSPAVAFPGY MASTASAKAK FRSMSTPKER FAVPSDAYSE
401: QCFADRLMSP IPSMSPMPSI ASDMGFARSS RPPVAQRSPR VKGGPMTPSR IRSRRSPSRH SFGSEAALHQ MQLEHYTPIR
001: MAKKKGLFTV LKRIFISEVN SEKKEKRRKW TFWKLRIKKR LPSITAPPEH RTSHESHEEQ KEEIVSDVGE ISQVSCSRQL DSIEESKGST SPETADLVVQ
101: YQMFLNRQEE VLAATRIQTA FRGHLARKAL RALKGIVKLQ AYIRGRAVRR QAMTTLKCLQ SVVNIQSQVC GKRTQIPGGV HRDYEESNIF NDNILKVDTN
201: GQKRWDDSLL TKEEKEAVVM SKKEASLRRE RIKEYAVTHR KSAESYQKRS NTKWKYWLDE WVDTQLTKSK ELEDLDFSSK TKPKDETLNE KQLKTPRNSS
301: PRRLVNNHRR QVSIGEDEQS PAAVTITTPT YMVATESAKA KSRSLSSPRI RPRSFDTQSE SYSPYKNKLC LTTSMMSEAP SKVRIANNGS NTRPSAYQQR
401: SPGLRGFNIG PLKSCNNNNT LLNDLSINSE RSLPSWNKQS SLR
101: YQMFLNRQEE VLAATRIQTA FRGHLARKAL RALKGIVKLQ AYIRGRAVRR QAMTTLKCLQ SVVNIQSQVC GKRTQIPGGV HRDYEESNIF NDNILKVDTN
201: GQKRWDDSLL TKEEKEAVVM SKKEASLRRE RIKEYAVTHR KSAESYQKRS NTKWKYWLDE WVDTQLTKSK ELEDLDFSSK TKPKDETLNE KQLKTPRNSS
301: PRRLVNNHRR QVSIGEDEQS PAAVTITTPT YMVATESAKA KSRSLSSPRI RPRSFDTQSE SYSPYKNKLC LTTSMMSEAP SKVRIANNGS NTRPSAYQQR
401: SPGLRGFNIG PLKSCNNNNT LLNDLSINSE RSLPSWNKQS SLR
Arabidopsis Description
IQD11IQ-domain 11 [Source:UniProtKB/TrEMBL;Acc:Q9LYR0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.