Factsheet for Solyc04g016480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	92.2	93.33
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	61.46	59.86
VIT_08s0007g05960.t01	Wine grape	cytosol	48.54	46.82
CDX70272	Canola	cytosol, mitochondrion	30.73	43.0
CDY41423	Canola	cytosol, mitochondrion	30.49	42.66
CDY72577	Canola	cytosol, mitochondrion	29.51	41.72
KRH33197	Soybean	cytosol, mitochondrion	39.27	41.28
Bra009498.1-P	Field mustard	cytosol, mitochondrion	37.8	40.58
Bra028807.1-P	Field mustard	mitochondrion	37.56	40.53
VIT_08s0007g05980.t01	Wine grape	cytosol	43.66	39.6
CDY41417	Canola	mitochondrion	27.8	38.13
AT5G03960.2	Thale cress	cytosol, mitochondrion	37.56	38.12
CDY04907	Canola	endoplasmic reticulum	30.73	37.61
CDY14162	Canola	endoplasmic reticulum	30.73	37.61
Solyc01g088250.2.1	Tomato	cytosol, plastid	32.2	28.82
GSMUA_Achr3P17450_001	Banana	nucleus	31.22	28.51
Solyc08g007920.1.1	Tomato	cytosol	16.1	28.21
Solyc08g007930.1.1	Tomato	cytosol	15.61	28.19
TraesCS5A01G163000.1	Wheat	nucleus	30.0	25.84
TraesCS5B01G160400.1	Wheat	cytosol	29.76	25.63
TraesCS5D01G168000.2	Wheat	nucleus	30.0	25.62
Solyc12g008520.1.1	Tomato	cytosol	24.39	24.45
EER94844	Sorghum	cytosol	29.51	24.25
Solyc06g066430.2.1	Tomato	nucleus	23.17	24.23
Zm00001d029197_P001	Maize	nucleus	28.05	24.16
Os03t0355700-00	Rice	cytosol	25.85	23.5
Solyc08g080470.2.1	Tomato	plastid	26.1	21.44
Solyc09g082560.2.1	Tomato	nucleus	24.39	21.41
HORVU5Hr1G050840.5	Barley	cytosol, plastid	28.54	21.04
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	24.63	20.78
Solyc02g087760.2.1	Tomato	nucleus	19.76	14.57
Solyc05g007130.2.1	Tomato	cytosol, plastid	17.8	13.25
Solyc04g081210.2.1	Tomato	nucleus	20.73	9.86

Protein Annotations

EnsemblPlants:Solyc04g016480.2.1	EnsemblPlantsGene:Solyc04g016480.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:DUF4005
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	PFAM:PF00612	PFAM:PF13178
PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000276716F	UniProt:K4BQE8	MapMan:35.1

Description

No Description!

Coordinates

chr4:-:7305326..7308804

Molecular Weight (calculated)

47286.2 Da

IEP (calculated)

10.952

GRAVY (calculated)

-0.660

Length

410 amino acids

Sequence
(BLAST)

001: MRKRRGWFVF VKRLLFISEA KPKAEKKPKR WKWFLGRFKF KQCPPAIEAP QQTLTEVTEQ QKKHAVAVAL ATATAAEAAV AAANAAAEVV RLTIAPYELE
101: RKRRNAAIRI QTAYRAHLAR KALSALKGLV KLQAVIRGEL VRRRLVSKLK FMLPFQMSKP KVYHIRVPTV EEYYESIEKK LDDSLKESVK SNEIKLKCNS
201: QRTWDFSLAS KEEIDSLFLR RQEAFAKRER MMKYSFSHRE RRNDHVMQDP SIIKENRRGS RLDQWAEIEA QRKAELFEQL RSFANSSSPL VGMNQMRQAR
301: KLDVTEDLNS PSSLPRRSFS HVKQKSIGDD SSLPSSPMFP TYMAATESAK AKTRSMSTPK QRLILNETYS VQHSPYMLNH TSWTSYNGEV KKSTKKSEIS
401: QKTAINIKGF

Best Arabidopsis Sequence Match ( AT5G03960.3 )
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKKPRRL RWVFKRLKLR PQLATCGQET RTLNEATQDQ RKHAMNVAIA TAAAAEAAVA AAKAAAEVVR MAGNAFTSQH
101: FVKKLAPNVA AIKIQSAFRA SLARKALRAL KALVRLQAIV RGRAVRRKVS ALLKSSHSNK ASTSNIIQRQ TERKHWSNTK SEIKEELQVS NHSLCNSKVK
201: CNGWDSSALT KEDIKAIWLR KQEGVIKRDR MLKYSRSQRE RRSPHMLVES LYAKDMGMRS CRLEHWGESK SAKSINSFLI PSEMLVPTKV KLRSLQRQDS
301: GDGQDSPFSF PRRSFSRLEQ SILEDESWFQ RSNGFQPYMS VTESAREKMR SLSTPRQRVG IMDSLFDNYK KDGDKVSLWS TFVCENSKIN NAKKSSLTTY
401: QHNC

Arabidopsis Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.