Factsheet for Solyc08g080470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007855	Potato	cytosol, plastid	95.99	95.8
VIT_02s0025g04120.t01	Wine grape	mitochondrion	62.93	63.56
Solyc08g007920.1.1	Tomato	cytosol	27.86	59.4
Solyc08g007930.1.1	Tomato	cytosol	26.25	57.71
KRH03972	Soybean	cytosol	47.7	53.24
KRH77498	Soybean	cytosol, mitochondrion	41.88	52.78
KRH57246	Soybean	cytosol	46.09	51.69
GSMUA_Achr8P11920_001	Banana	cytosol	36.47	50.7
EES12687	Sorghum	cytosol, mitochondrion	46.49	49.68
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	45.29	49.13
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	44.69	48.58
Zm00001d002630_P002	Maize	mitochondrion	44.49	48.58
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	44.89	48.48
Os04t0569900-01	Rice	cytosol, mitochondrion	44.89	48.28
HORVU0Hr1G005320.2	Barley	cytosol	34.67	47.53
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	41.48	47.26
Zm00001d026084_P001	Maize	mitochondrion	45.09	45.36
CDX98787	Canola	mitochondrion	26.45	44.59
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	37.88	44.06
CDX94150	Canola	nucleus	39.68	42.67
CDY41252	Canola	cytosol, mitochondrion	41.68	42.62
CDY41368	Canola	mitochondrion, plastid	35.87	42.62
CDX98786	Canola	nucleus	40.48	42.53
Bra019337.1-P	Field mustard	nucleus	40.08	42.46
Bra020822.1-P	Field mustard	mitochondrion, plastid	35.67	42.38
CDX76341	Canola	mitochondrion, plastid	35.67	42.38
Bra013672.1-P	Field mustard	mitochondrion, nucleus	42.08	42.34
CDY53133	Canola	nucleus	40.88	41.98
AT4G23060.1	Thale cress	mitochondrion, nucleus	40.48	41.74
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	34.67	40.9
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	37.68	38.68
Solyc06g066430.2.1	Tomato	nucleus	26.85	34.18
Solyc12g008520.1.1	Tomato	cytosol	26.85	32.76
Solyc09g082560.2.1	Tomato	nucleus	28.26	30.19
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	21.44	26.1
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	19.04	22.57
Solyc01g088250.2.1	Tomato	cytosol, plastid	18.64	20.31
Solyc02g087760.2.1	Tomato	nucleus	21.24	19.06
Solyc05g007130.2.1	Tomato	cytosol, plastid	17.64	15.97
Solyc04g081210.2.1	Tomato	nucleus	20.04	11.6

Protein Annotations

EnsemblPlants:Solyc08g080470.2.1	EnsemblPlantsGene:Solyc08g080470.2	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF13	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000276B8DE	UniProt:K4CP47
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:63762845..63766810

Molecular Weight (calculated)

54353.5 Da

IEP (calculated)

10.744

GRAVY (calculated)

-0.738

Length

499 amino acids

Sequence
(BLAST)

001: MGKASKWFRG LLGLKKQDPS SSSNQNPKPT KKKWSFVKSY REKDSNFVKG TDKESSNYGR VVSNSLQNGA VGCSVDSSKR AIAVAEATAV VAEAAIAAAQ
101: AAAAVVKLTN SGRATTATNG GAAAVTTWNG VSLTSSAVGC KRKGVAAGNR ENWAAVVIQS HFRAYLSRRA LRALKGLVKL QALVRGHIIR RQTADYLRQM
201: QAISRAQSRA RAGRSQVSGS PHSSTKSVQF VHDPTTPEKF EHVIRARSLK HDETSVLKRN TSKSNWKVID SEKARIRPQG SSARTSSIDD EKSDKILEID
301: TGKPYVTPKQ RNLFHSSHLC LNSDQYSYSL TTSKESTAHQ TVPSPSSCGN QPLSPLKFNE DLDEACFCTA DNSPQFYSAS SKGGSSKRGP FTPTKSDGSR
401: SYMSGYSDHP NYMSYTESSK AKVRSMSAPK QRPHYERSSS TKRYSIHGYS ESRNNSQKGS FYANFTGKAY PGSGRLDRLG MPVIRADPSG FSGGLRHRY

Best Arabidopsis Sequence Match ( AT4G23060.1 )
(BLAST)

001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY

Arabidopsis Description

IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.