Factsheet for Solyc12g008520.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000953	Potato	cytosol	81.17	91.21
VIT_11s0016g03030.t01	Wine grape	cytosol	63.08	59.31
KRH60203	Soybean	cytosol, mitochondrion	50.12	56.94
KRH41488	Soybean	cytosol, mitochondrion	60.64	56.88
KRH74242	Soybean	cytosol, mitochondrion	56.97	55.48
Solyc06g066430.2.1	Tomato	nucleus	50.86	53.06
KRH48992	Soybean	endoplasmic reticulum	38.14	46.15
GSMUA_Achr6P14870_001	Banana	cytosol, mitochondrion	41.56	45.33
TraesCS1B01G142100.1	Wheat	cytosol	48.17	43.39
AT4G29150.1	Thale cress	mitochondrion	42.3	43.36
Os01t0190500-01	Rice	cytosol, mitochondrion	49.14	43.23
GSMUA_Achr5P06520_001	Banana	cytosol, mitochondrion	42.79	43.1
GSMUA_Achr10P...	Banana	cytosol	46.45	43.08
Bra024161.1-P	Field mustard	mitochondrion	40.83	43.04
TraesCS1A01G122900.1	Wheat	cytosol, plastid	47.68	42.95
TraesCS1D01G123800.1	Wheat	cytosol	47.68	42.95
CDY30233	Canola	mitochondrion	40.59	42.78
CDY47784	Canola	mitochondrion	40.59	42.78
Os05t0187500-01	Rice	cytosol	49.14	42.77
GSMUA_Achr3P17570_001	Banana	cytosol, mitochondrion	41.81	42.33
TraesCS3D01G109900.1	Wheat	cytosol, mitochondrion	46.94	41.65
Zm00001d037688_P001	Maize	mitochondrion	46.7	41.34
GSMUA_AchrUn_...	Banana	cytosol	38.14	41.16
TraesCS3B01G127100.1	Wheat	cytosol	46.45	41.04
TraesCS3A01G108100.1	Wheat	cytosol, mitochondrion	46.45	40.69
EES02320	Sorghum	mitochondrion	47.43	40.42
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	36.43	40.38
GSMUA_Achr7P13670_001	Banana	cytosol, mitochondrion	37.16	40.32
Zm00001d010366_P001	Maize	cytosol, mitochondrion	45.97	40.09
KXG21487	Sorghum	cytosol, mitochondrion	47.19	39.15
Zm00001d039510_P001	Maize	cytosol, mitochondrion	44.99	38.25
GSMUA_Achr8P20170_001	Banana	cytosol, mitochondrion	36.92	37.75
HORVU1Hr1G028250.6	Barley	mitochondrion	47.68	37.0
Zm00001d008819_P001	Maize	mitochondrion	42.05	36.91
Solyc08g007920.1.1	Tomato	cytosol	20.29	35.47
Solyc08g007930.1.1	Tomato	cytosol	19.32	34.8
HORVU3Hr1G019630.3	Barley	endoplasmic reticulum, plastid	46.45	33.16
Solyc09g082560.2.1	Tomato	nucleus	34.96	30.62
Solyc08g080470.2.1	Tomato	plastid	32.76	26.85
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	29.1	24.49
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	24.45	24.39
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	22.74	22.09
Solyc01g088250.2.1	Tomato	cytosol, plastid	23.23	20.74
Solyc02g087760.2.1	Tomato	nucleus	21.52	15.83
Solyc05g007130.2.1	Tomato	cytosol, plastid	18.34	13.61
Solyc04g081210.2.1	Tomato	nucleus	22.25	10.56

Protein Annotations

EnsemblPlants:Solyc12g008520.1.1	EnsemblPlantsGene:Solyc12g008520.1	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF22	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	SEG:seg	SMART:SM00015	UniParc:UPI000276956B	UniProt:K4DBU0
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:1931971..1934807

Molecular Weight (calculated)

45071.4 Da

IEP (calculated)

10.666

GRAVY (calculated)

-0.565

Length

409 amino acids

Sequence
(BLAST)

001: MGKAIKWLKG LFGIKKLEID EKGKIGTTCF GHSGRDTTAV AAVSDRLCHN PTTIPPNITP AEAAWLSSFY GDESDKEQSK HAIAVAAATA AAADAAVAAA
101: HAAVAVVRLT SQGRSSAVFG REKMAATKIQ TVFRGFLARK ALRALKGLVK LQALVRGYLV RRQANATFHS MQALMRVQAS VRALKINGGF YVNHQNSQFQ
201: QRKSIEKFEE SRSGSTKQMS SRRLSSSFEA NNINEESAKI VEMDTGRPKS RSRRTNTWAS NPCDDPFEQV LSSWASDWAQ QPVGTAQSTP RFANSCGSNT
301: PTAKSVCVES KYFRNNNYYD TNNNYYPNYM AKTQSFKAKL RSHSAPKQRP ELGSRVKKMS LNEMMESRVS SSGVKMQRSC SQAQEKISIN FKNVVMSKLG
401: NSTEGERDF

Best Arabidopsis Sequence Match ( AT3G16490.1 )
(BLAST)

001: MGRAARWFKG IFGMKKSKEK ENCVSGDVGG EAGGSNIHRK VLQADSVWLR TYLAETDKEQ NKHAIAVAAA TAAAADAAVA AAQAAVAVVR LTSNGRSGGY
101: SGNAMERWAA VKIQSVFKGY LARKALRALK GLVKLQALVR GYLVRKRAAE TLHSMQALIR AQTSVRSQRI NRNNMFHPRH SLERLDDSRS EIHSKRISIS
201: VEKQSNHNNN AYDETSPKIV EIDTYKTKSR SKRMNVAVSE CGDDFIYQAK DFEWSFPGEK CKFPTAQNTP RFSSSMANNN YYYTPPSPAK SVCRDACFRP
301: SYPGLMTPSY MANTQSFKAK VRSHSAPRQR PDRKRLSLDE IMAARSSVSG VRMVQPQPQP QTQTQQQKRS PCSYDHQFRQ NETDFRFYN

Arabidopsis Description

IQD26At3g16490 [Source:UniProtKB/TrEMBL;Acc:Q9LK76]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.