Factsheet for Solyc04g081210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009545	Potato	nucleus	91.76	91.13
VIT_18s0001g13870.t01	Wine grape	nucleus	47.8	52.02
KRH51729	Soybean	cytosol	41.3	41.93
GSMUA_Achr1P19900_001	Banana	cytosol	10.44	38.63
CDY44186	Canola	nucleus, plastid	32.48	38.3
GSMUA_Achr1P06080_001	Banana	nucleus	33.64	37.23
CDY29389	Canola	nucleus, plastid	32.25	37.17
GSMUA_Achr3P11240_001	Banana	nucleus	33.64	37.13
KRH61064	Soybean	nucleus	31.21	37.0
CDY62588	Canola	nucleus	31.79	36.98
Bra016490.1-P	Field mustard	nucleus	31.44	36.67
CDX83739	Canola	nucleus	31.44	36.67
Bra025777.1-P	Field mustard	nucleus, plastid	31.55	36.56
AT1G19870.1	Thale cress	nucleus	33.06	35.89
GSMUA_Achr1P19910_001	Banana	nucleus	24.71	35.62
GSMUA_Achr7P06540_001	Banana	endoplasmic reticulum, plasma membrane	32.13	32.74
TraesCS2A01G492300.1	Wheat	nucleus	31.67	31.71
TraesCS2D01G492600.1	Wheat	nucleus	31.32	31.36
TraesCS2B01G520500.3	Wheat	nucleus	30.63	30.81
Os04t0663100-01	Rice	plasma membrane	31.9	30.8
EES11606	Sorghum	nucleus	30.97	30.14
Zm00001d001953_P003	Maize	nucleus	30.74	28.9
Zm00001d026535_P003	Maize	nucleus	30.05	28.75
Solyc08g007920.1.1	Tomato	cytosol	7.31	26.92
Solyc08g007930.1.1	Tomato	cytosol	6.61	25.11
Solyc06g066430.2.1	Tomato	nucleus	11.14	24.49
Solyc12g008520.1.1	Tomato	cytosol	10.56	22.25
Solyc09g082560.2.1	Tomato	nucleus	11.72	21.63
Solyc05g007130.2.1	Tomato	cytosol, plastid	13.57	21.23
Solyc02g087760.2.1	Tomato	nucleus	13.57	21.04
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	9.86	20.73
Solyc08g080470.2.1	Tomato	plastid	11.6	20.04
Solyc01g088250.2.1	Tomato	cytosol, plastid	10.44	19.65
Solyc03g026110.2.1	Tomato	cytosol, mitochondrion	10.9	19.34
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	9.16	18.76
HORVU2Hr1G124440.1	Barley	cytosol	0.93	13.11

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.1	InterPro:DUF4005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0005856	GO:GO:0005875	GO:GO:0005886	GO:GO:0008150	GO:GO:0009536	GO:GO:0009719
GO:GO:0009737	GO:GO:0009941	GO:GO:0016020	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	UniProt:K4BVK0
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF16	EnsemblPlantsGene:Solyc04g081210.2
EnsemblPlants:Solyc04g081210.2.1	UniParc:UPI0002765E95	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:+:65210004..65215795

Molecular Weight (calculated)

94394.2 Da

IEP (calculated)

5.737

GRAVY (calculated)

-0.935

Length

862 amino acids

Sequence
(BLAST)

001: MGKSTASSCL KIIACGSDSV DRDELEAHPE SKSSSDKRGW SFRKKSTRHR VLSNSVVSET PSGNKDWPEA ANANLQTQSN STIPEKASVV QWADEKPQFS
101: TVEKSQVSAD EKPQILEDET PLVSVDKKPQ VSADEKPRVS TDAKPQLSVE VSVDEKPLIS EEEKLEVSED EKPNISIDEK PPISSEEKSL VSDLVDAKQS
201: ESVIIAGFND AKADVIPDEH ALVIQTAVRA FLARRAQLKQ KHITKLQAAV RGHLVRRQAV GTLRCVQAIV KMQILVRARH TNRIAEESSI KEKLKGKENS
301: GTKSEFTYIS ISKLLSNSFA QQLLESTPRT KSINIKCDPS KSDSAWKWLE RWMSVASPGN QPSPQSELSA DQQENEPIEH PSNLIENEVQ LDSESMDFRQ
401: GEEASLSAVP SESDDNLITY DADSLDFQAN IPFSPPQPQN VDEKTSRDDT FCSIPTQHKE AKALPETVPN SFPANTEVER EDTHSLELSE TESKKILHGS
501: RKASNPAFIA AQTKFEELTL AAKSTKDSSL PNHKTEDESS EDTFSTITNH SFGARDAAPS ENSVPHSTRA QVGGSECGTE LSISSTLDSP DRSEVGGHVF
601: EQELPSNGGT DHHKSNGYPH IEDDSTNDLS HSDYVQAGRE DPTDDAKHVD VMVSSDLSPV EQKPENNSVN VQIEQEARTD RLDKSSPDAS PRSHITVPES
701: QGTPSSQVSV NPKKIRSEKS GSIPKRRSAP AGKKSPSKLN HAPGTTSSEQ LSKDHKNEKR RNSFGSTKAG LADQEARDNS TSSSLPSYMQ ATESARAKAI
801: PNSSPRSSPD VHNKDEYIKK RHSLPGSNGR QGSPRIQRSL SNAQQGAKGN GTQSPQERKW QR

Best Arabidopsis Sequence Match ( AT1G19870.1 )
(BLAST)

001: MGRSPASSCL RLISCSGGDD TSADPNSTAL ENKSSGDKRG WSFRKKSGKQ RGLITSVVSE TTPASRTRET LESALLKSPS PDNNNVSEKQ QQSFSVDEKK
101: SQLPVVTYVA EPVDEKKTQS VIEEKTELLS VEEQIDHRTE VSPVIVESKG TETEEDDLIG TELQGPSAAD AAKIEEDVTS EVEMASKVEP EESESDDVII
201: VRKESDEKVD EKLDESVIVV IQAAVRGFLA RRELLRSKKV IKLQAAVRGH LVRSQAMGSL RCVQAIVKMQ AMVRARHSTK DGSRVSATSD KSEPNAAAQK
301: LLENKFAKHL MESTPKTKPI NIKCDPTKPS SAWNWLERWM SVPKPEKTSK ANLTTEEQNL EETQNVKISP QADFVNSDST VENKTETDMP SYEASKVEGQ
401: NVELSETEKM SQYDSPEASA EVYYDSIQSQ PLAAKPDSLL EEPEYVDGQI KHSLKRKVSN PSFIAAQSKF EELTSSTGSN KAMTLSSKDD VLGEEGKTDI
501: DSPDTTNTIK DHSLEDVTPA ELSGSECGTE LSVTSSLDTL EKKSDAEGAE PRVEAKLLED DTFKTDQAEL IEIDVKDATS MGTVEDPKEK VENAKDEVEI
601: SATHHEPVIS TPDSKKRRAE DESGPQAYAL SEGALTPMTI TESQATPASQ ASSSVKARKG KSEKSGSSQK RKVSKKITSS PKQEIGTGEA TEQEEGKEQK
701: SGRRTSFGYD QEARESSGGK NSLPRFMQPT QSAKAKVQEH NSPRSSPDLQ ERDVVSAKKR HSLPGVTNGK QVSPRIQRSA SQAQQGTKDR KWQR

Arabidopsis Description

IQD32Protein IQ-DOMAIN 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.