Factsheet for VIT_18s0001g13870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51729	Soybean	cytosol	54.29	50.65
Solyc04g081210.2.1	Tomato	nucleus	52.02	47.8
PGSC0003DMT400009545	Potato	nucleus	52.15	47.58
KRH61064	Soybean	nucleus	41.41	45.12
GSMUA_Achr1P19900_001	Banana	cytosol	12.25	41.63
GSMUA_Achr3P11240_001	Banana	nucleus	40.28	40.85
GSMUA_Achr1P06080_001	Banana	nucleus	39.52	40.18
CDX83739	Canola	nucleus	36.49	39.11
Bra016490.1-P	Field mustard	nucleus	36.11	38.7
CDY62588	Canola	nucleus	35.73	38.19
CDY44186	Canola	nucleus, plastid	35.23	38.17
Bra025777.1-P	Field mustard	nucleus, plastid	35.73	38.04
CDY29389	Canola	nucleus, plastid	35.73	37.83
GSMUA_Achr1P19910_001	Banana	nucleus	28.41	37.63
AT1G19870.1	Thale cress	nucleus	37.5	37.41
GSMUA_Achr7P06540_001	Banana	endoplasmic reticulum, plasma membrane	39.02	36.52
TraesCS2B01G520500.3	Wheat	nucleus	34.6	31.97
TraesCS2A01G492300.1	Wheat	nucleus	34.09	31.36
TraesCS2D01G492600.1	Wheat	nucleus	33.96	31.24
Os04t0663100-01	Rice	plasma membrane	34.22	30.35
EES11606	Sorghum	nucleus	33.08	29.57
Zm00001d001953_P003	Maize	nucleus	33.71	29.12
Zm00001d026535_P003	Maize	nucleus	33.08	29.08
VIT_00s0684g00020.t01	Wine grape	mitochondrion	4.8	27.74
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	13.38	26.37
VIT_11s0016g03030.t01	Wine grape	cytosol	13.38	24.37
VIT_16s0100g00620.t01	Wine grape	cytosol	9.6	22.82
VIT_14s0108g00150.t01	Wine grape	nucleus	16.41	22.49
VIT_02s0025g04120.t01	Wine grape	mitochondrion	14.02	22.47
VIT_01s0026g01790.t01	Wine grape	cytosol	15.4	21.11
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	16.54	21.03
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	12.37	20.9
VIT_05s0020g03980.t01	Wine grape	cytosol	11.99	20.47
VIT_08s0007g05960.t01	Wine grape	cytosol	10.73	20.0
VIT_14s0030g01880.t01	Wine grape	nucleus	9.6	19.44
VIT_08s0007g05980.t01	Wine grape	cytosol	10.48	18.36
HORVU2Hr1G124440.1	Barley	cytosol	1.14	14.75

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100259212	wikigene:100259212	EntrezGene:100853736	wikigene:100853736	MapMan:35.1
ProteinID:CCB46016	ProteinID:CCB46016.1	InterPro:DUF4005	UniProt:F6H068	EMBL:FN595227	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005856	GO:GO:0005875	GO:GO:0005886	GO:GO:0008150
GO:GO:0009536	GO:GO:0009719	GO:GO:0009737	GO:GO:0009941	GO:GO:0016020	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100259212	wikigene:LOC100259212	EntrezGene:LOC100853736	wikigene:LOC100853736	InterPro:P-loop_NTPase
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF16	SMART:SM00015
SUPFAM:SSF52540	TIGR:TC55386	UniParc:UPI0002109A68	ArrayExpress:VIT_18s0001g13870	EnsemblPlantsGene:VIT_18s0001g13870	EnsemblPlants:VIT_18s0001g13870.t01
unigene:Vvi.10411	RefSeq:XP_002280378	RefSeq:XP_002280378.2	RefSeq:XP_003634378	RefSeq:XP_003634378.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:11862607..11871541

Molecular Weight (calculated)

85878.1 Da

IEP (calculated)

6.358

GRAVY (calculated)

-0.794

Length

792 amino acids

Sequence
(BLAST)

001: MGRSASCFKI ISCGGDSVGQ DELDLAERKG YSDKRGWSFR KRSARHRVLS NTVVSEIPSS GNKESPESAA INFQTPVDST IPEKTSVPQW ADEKPQLSTS
101: FNSKASETVV ASENESKVDV NVDESAAIAI QAAVRGFLAQ RALLKLKNVI KLQAAVRGHL VRRHAVGTLR VVQAIVKIQA LVRARRVQAG KLDDRKDKPS
201: SKPMEKENSS ADPSATYTSI DKLLSNGFAR QLLESNPRTK SIHIKCDPSR PNSGWQWLER WMSVSSSNLG QPQIPVLEKE ELEHERVENS AVQVETGITS
301: ETTSESEDLK SNVRETAVPS ESEENLITYD AESFDFQTCC PTSSSVKDNL ELPPSENTGG TSHAKDSPSE IDLLPNHTMQ PEEKSLTEFN SVSGKSEMES
401: EQPKRSVKRF ASEQLETEGK KFVFGSRKVS NPAFVAAQSK FEELSSTANS GRLISPSHQD VGVESNIETV SSAADTSITT KDLNSEDNSI PPNSRLQVGG
501: SECGTELSIT STLDSPDISE VGAMEFDNEA KVSEEVICNL NSTGGLDVES KDVSTIAVSN LSDTMLAPPE KRDAVNGEPV NSVVDVDSSQ VKQKPERTAS
601: DLQIELDPQT GRQAYRSSPE ASPRSHITVP ESQGTPSSQV SVKAKRSKTD KSGSNQKRAS LSAGKRSPSN PNHDSGARSS MEQLPKDQKT GKRRNSFGST
701: RPDNVDQEPR DSSSSNSLPS YMQATESARA KLHANNSPRS SPDVQDKDIY IKKRHSLPGA NGRQGSPRIQ RSMSQAQQGA KGNSANPPHG IF

Best Arabidopsis Sequence Match ( AT1G19870.2 )
(BLAST)

001: MASKVEPEES ESDDVIIVRK ESDEKVDEKL DESVIVVIQA AVRGFLARRE LLRSKKVIKL QAAVRGHLVR SQAMGSLRCV QAIVKMQAMV RARHSTKDGS
101: RVSATSDKSE PNAAAQKLLE NKFAKHLMES TPKTKPINIK CDPTKPSSAW NWLERWMSVP KPEKTSKANL TTEEQNLEET QNVKISPQAD FVNSDSTVEN
201: KTETDMPSYE ASKVEGQNVE LSETEKMSQY DSPEASAEVY YDSIQSQPLA AKPDSLLEEP EYVDGQIKHS LKRKVSNPSF IAAQSKFEEL TSSTGSNKAM
301: TLSSKDDVLG EEGKTDIDSP DTTNTIKDHS LEDVTPAELS GSECGTELSV TSSLDTLEKK SDAEGAEPRV EAKLLEDDTF KTDQAELIEI DVKDATSMGT
401: VEDPKEKVEN AKDEVEISAT HHEPVISTPD SKKRRAEDES GPQAYALSEG ALTPMTITES QATPASQASS SVKARKGKSE KSGSSQKRKV SKKITSSPKQ
501: EIGTGEATEQ EEGKEQKSGR RTSFGYDQEA RESSGGKNSL PRFMQPTQSA KAKVQEHNSP RSSPDLQERD VVSAKKRHSL PGVTNGKQVS PRIQRSASQA
601: QQGTKDRKWQ R

Arabidopsis Description

IQD32Protein IQ-DOMAIN 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXI5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.