Factsheet for VIT_02s0025g04120.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080470.2.1	Tomato	plastid	63.56	62.93
PGSC0003DMT400007855	Potato	cytosol, plastid	62.96	62.2
KRH77498	Soybean	cytosol, mitochondrion	47.37	59.09
KRH03972	Soybean	cytosol	53.44	59.06
GSMUA_Achr8P11920_001	Banana	cytosol	42.91	59.05
KRH57246	Soybean	cytosol	51.82	57.53
Solyc08g007920.1.1	Tomato	cytosol	26.92	56.84
Solyc08g007930.1.1	Tomato	cytosol	25.1	54.63
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	50.4	54.25
EES12687	Sorghum	cytosol, mitochondrion	51.01	53.96
Zm00001d002630_P002	Maize	mitochondrion	49.19	53.17
PGSC0003DMT400014796	Potato	cytosol	38.66	53.06
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	49.19	52.83
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	49.39	52.81
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	46.76	52.74
Os04t0569900-01	Rice	cytosol, mitochondrion	49.39	52.59
HORVU0Hr1G005320.2	Barley	cytosol	38.06	51.65
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	44.74	51.52
Zm00001d026084_P001	Maize	mitochondrion	49.8	49.6
CDX98787	Canola	mitochondrion	29.35	48.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	40.89	47.75
AT4G23060.1	Thale cress	mitochondrion, nucleus	45.75	46.69
CDY41252	Canola	cytosol, mitochondrion	45.75	46.31
Bra013672.1-P	Field mustard	mitochondrion, nucleus	46.36	46.17
CDX98786	Canola	nucleus	44.33	46.11
CDY53133	Canola	nucleus	45.34	46.09
Bra019337.1-P	Field mustard	nucleus	43.93	46.07
CDY41368	Canola	mitochondrion, plastid	39.07	45.95
CDX94150	Canola	nucleus	42.31	45.04
Bra020822.1-P	Field mustard	mitochondrion, plastid	38.26	45.0
CDX76341	Canola	mitochondrion, plastid	38.26	45.0
VIT_16s0100g00620.t01	Wine grape	cytosol	29.76	44.14
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	32.79	40.3
VIT_11s0016g03030.t01	Wine grape	cytosol	32.79	37.24
VIT_00s0684g00020.t01	Wine grape	mitochondrion	9.92	35.77
VIT_05s0020g03980.t01	Wine grape	cytosol	33.2	35.34
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	26.92	28.36
VIT_14s0030g01880.t01	Wine grape	nucleus	21.46	27.11
VIT_08s0007g05960.t01	Wine grape	cytosol	23.08	26.82
VIT_08s0007g05980.t01	Wine grape	cytosol	21.66	23.67
VIT_14s0108g00150.t01	Wine grape	nucleus	23.89	20.42
VIT_01s0026g01790.t01	Wine grape	cytosol	22.87	19.55
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	23.08	18.3
VIT_18s0001g13870.t01	Wine grape	nucleus	22.47	14.02

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100254717	wikigene:100254717	MapMan:35.2	ProteinID:CCB58379	ProteinID:CCB58379.1
InterPro:DUF4005	UniProt:F6HUF6	EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009719	GO:GO:0009739	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100254717
wikigene:LOC100254717	InterPro:P-loop_NTPase	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295
PANTHER:PTHR32295:SF13	SMART:SM00015	SUPFAM:SSF52540	TIGR:TC68333	UniParc:UPI0001982C6B	ArrayExpress:VIT_02s0025g04120
EnsemblPlantsGene:VIT_02s0025g04120	EnsemblPlants:VIT_02s0025g04120.t01	unigene:Vvi.3964	RefSeq:XP_002276651	RefSeq:XP_002276651.1	SEG:seg

Description

No Description!

Coordinates

chr2:+:3644671..3649056

Molecular Weight (calculated)

54033.0 Da

IEP (calculated)

10.963

GRAVY (calculated)

-0.763

Length

494 amino acids

Sequence
(BLAST)

001: MGKASKWFRG LLGLKKTDSP APTPAPAPAR LDKSVKRRWS FVRSYREKDH TRHANDRRGA LYGEPHPPSA YADGVDPNKH AIAVAAATAA VAEAAVAAAQ
101: AAAAVVRLTS SGRSAAPSAY VSAGFSAREE WAVIKIQSLF RGYLARRALR ALKALVKLQA LVRGHIVRKQ TADMLRRMQA LVRAQARARA GRAQISESSH
201: SSGKSSQFHH PGPATPEKFE HAIRAKNMKQ DQSSILKRNS SKASGRNIID QDKTHLSRNW SDRRLDEGSW DQQGSSIRAG PTDDEKSDKI LEIDTGKPNF
301: TPKRRNLFQS SHHGVASDQI SHSFTTSKDS TTHQTVPSPS SCEVQSLSPL KFCQEVEEGS FCTADNSPQF YSASSRAGSS RRGPFTPTKS DGSRSYLSGY
401: SDHPNYMAYT ESSKAKVRSF SAPKQRPQYE RSSSTKRYSV HGFGDSRSNA QRVSAMHANF TSKAYPGSGR LDRLGMPIRS EAFGLSGGFS NSRY

Best Arabidopsis Sequence Match ( AT4G23060.1 )
(BLAST)

001: MGKASRWFRS LFGVKKPDPG YPDLSVETPS RSTSSNLKRR WSFVKSKREK ESTPINQVPH TPSLPNSTPP PPSHHQSSPR RRRKQKPMWE DEGSEDSDKH
101: AIAVAAATAA VAEAAVAAAN AAAAVVRLTS TSGRSTRSPV KARFSDGFDD VVAHGSKFYG HGRDSCELAV IKIQSIFRGY LAKRALRALK GLVRLQAIVR
201: GHIERKRMSV HLRRMHALVR AQARVRATRV IVTPESSSSQ SNNTKSSHFQ NPGPPTPEKL EHSISSRSSK LAHSHLFKRN GSKASDNNRL YPAHRETFSA
301: TDEEEKILQI DRKHISSYTR RNRPDMFYSS HLILDNAGLS EPVFATPFSP SSSHEEITSQ FCTAENSPQL YSATSRSKRS AFTASSIAPS DCTKSCCDGD
401: HPSYMACTES SRAKARSASA PKSRPQLFYE RPSSKRFGFV DLPYCGDTKS GPQKGSALHT SFMNKAYPGS GRLDRLGMPI GYRY

Arabidopsis Description

IQD22Calmodulin binding protein IQD22 [Source:UniProtKB/TrEMBL;Acc:Q2NNE0]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.