Factsheet for VIT_08s0007g05980.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g05960.t01	Wine grape	cytosol	65.93	70.12
KRH33197	Soybean	cytosol, mitochondrion	38.27	44.36
CDX70272	Canola	cytosol, mitochondrion	28.32	43.69
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	39.6	43.66
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	38.94	43.46
CDY41423	Canola	cytosol, mitochondrion	27.88	43.0
CDY72577	Canola	cytosol, mitochondrion	27.43	42.76
Bra009498.1-P	Field mustard	cytosol, mitochondrion	35.18	41.62
AT5G03960.2	Thale cress	cytosol, mitochondrion	36.06	40.35
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	41.59	40.09
Bra028807.1-P	Field mustard	mitochondrion	33.63	40.0
CDY41417	Canola	mitochondrion	25.0	37.79
CDY04907	Canola	endoplasmic reticulum	27.88	37.61
CDY14162	Canola	endoplasmic reticulum	27.88	37.61
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	34.96	37.53
PGSC0003DMT400021096	Potato	nucleus	17.26	35.29
VIT_00s0684g00020.t01	Wine grape	mitochondrion	8.85	29.2
GSMUA_Achr3P17450_001	Banana	nucleus	28.1	28.29
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	24.34	27.36
Os03t0355700-00	Rice	cytosol	26.33	26.39
TraesCS5A01G163000.1	Wheat	nucleus	26.55	25.21
Zm00001d029197_P001	Maize	nucleus	26.33	25.0
TraesCS5D01G168000.2	Wheat	nucleus	26.33	24.79
TraesCS5B01G160400.1	Wheat	cytosol	25.89	24.58
VIT_05s0020g03980.t01	Wine grape	cytosol	25.0	24.35
EER94844	Sorghum	cytosol	26.77	24.25
VIT_11s0016g03030.t01	Wine grape	cytosol	23.23	24.14
VIT_02s0025g04120.t01	Wine grape	mitochondrion	23.67	21.66
HORVU5Hr1G050840.5	Barley	cytosol, plastid	26.11	21.22
VIT_14s0030g01880.t01	Wine grape	nucleus	17.04	19.69
VIT_16s0100g00620.t01	Wine grape	cytosol	14.38	19.52
VIT_01s0026g01790.t01	Wine grape	cytosol	21.02	16.44
VIT_14s0108g00150.t01	Wine grape	nucleus	19.69	15.4
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	20.58	14.93
VIT_18s0001g13870.t01	Wine grape	nucleus	18.36	10.48

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100265924	wikigene:100265924	MapMan:35.2	ProteinID:CCB55281	ProteinID:CCB55281.1
InterPro:DUF4005	UniProt:F6HLM5	EMBL:FN595991	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0016787	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100265924	wikigene:LOC100265924
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	SMART:SM00015
UniParc:UPI0002108AFB	ArrayExpress:VIT_08s0007g05980	EnsemblPlantsGene:VIT_08s0007g05980	EnsemblPlants:VIT_08s0007g05980.t01	RefSeq:XP_002277151	RefSeq:XP_002277151.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:19849625..19853893

Molecular Weight (calculated)

51656.9 Da

IEP (calculated)

10.361

GRAVY (calculated)

-0.653

Length

452 amino acids

Sequence
(BLAST)

001: MLGHFLHQCY ILYAKLFLEG ETVGWQCIRL CVCKSKRWKW VFTRLKLKQC PALAAPCRTL TEARDEQKKH AMTVALATAA AAEAAVAAAH AAAEVVRLTG
101: TPQSYHTYDK GNQNLAAIKI QTAFRGHLAR KALRALKGLV RLQALIRGQI LRRQVITTLK CLPSTANNQA QVNKRGVLTA NESYKDSDNR KFLRPKELGG
201: REIKDYVIEQ LEGSSKKSWD CSMLLKEDME TIWLRKQEAV TKRERMKKYS SSHRERINAQ MTEETESYKE NGKWNSQFEQ WMDAREYERE ELENSKSTIH
301: LNMLNSDKNG TTNVKLRNAC KQNSIEGSNL PFSHSRRSFC HRKHNSEADN RSFPSSPVFP TYMATTESAK AKARSMSMPK QRVGFLDSCF DHSSAYKNRL
401: SFWSSFNGES ISNIGKNGTP QNSKWFVIME KTFLCISSKK KPFHSYPART VL

Best Arabidopsis Sequence Match ( AT5G03960.1 )
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKPRRLR WVFKRLKLRP QLATCGQETR TLNEATQDQR KHAMNVAIAT AAAAEAAVAA AKAAAEVVRM AGNAFTSQHF
101: VKKLAPNVAA IKIQSAFRAS LARKALRALK ALVRLQAIVR GRAVRRKVSA LLKSSHSNKA STSNIIQRQT ERKHWSNTKS EIKEELQVSN HSLCNSKVKC
201: NGWDSSALTK EDIKAIWLRK QEGVIKRDRM LKYSRSQRER RSPHMLVESL YAKDMGMRSC RLEHWGESKS AKSINSFLIP SEMLVPTKVK LRSLQRQDSG
301: DGQDSPFSFP RRSFSRLEQS ILEDESWFQR SNGFQPYMSV TESAREKMRS LSTPRQRVGI MDSLFDNYKK DGDKVSLWST FVCENSKINN AKKSSLTTYQ
401: HNC

Arabidopsis Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.