Factsheet for AT5G03960.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009498.1-P	Field mustard	cytosol, mitochondrion	77.23	81.68
CDX70272	Canola	cytosol, mitochondrion	57.92	79.86
CDY41423	Canola	cytosol, mitochondrion	57.18	78.84
KRH33197	Soybean	cytosol, mitochondrion	41.58	43.08
VIT_08s0007g05960.t01	Wine grape	cytosol	42.82	40.71
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	39.11	39.01
Solyc04g016480.2.1	Tomato	mitochondrion, nucleus	38.12	37.56
VIT_08s0007g05980.t01	Wine grape	cytosol	40.35	36.06
Solyc10g079240.1.1	Tomato	mitochondrion, nucleus	35.64	34.2
AT3G51380.1	Thale cress	mitochondrion	7.43	29.13
GSMUA_Achr3P17450_001	Banana	nucleus	29.95	26.95
PGSC0003DMT400021096	Potato	nucleus	14.6	26.7
TraesCS5B01G160400.1	Wheat	cytosol	27.97	23.74
Os03t0355700-00	Rice	cytosol	26.49	23.73
TraesCS5A01G163000.1	Wheat	nucleus	27.72	23.53
AT5G13460.1	Thale cress	nucleus	25.74	23.48
EER94844	Sorghum	cytosol	28.96	23.45
TraesCS5D01G168000.2	Wheat	nucleus	27.72	23.33
Zm00001d029197_P001	Maize	nucleus	27.48	23.32
AT1G51960.1	Thale cress	cytosol, mitochondrion	19.55	22.51
AT3G16490.1	Thale cress	cytosol	21.53	22.36
AT5G62070.1	Thale cress	cytosol, plastid	22.03	22.08
AT4G29150.1	Thale cress	mitochondrion	21.53	21.8
HORVU5Hr1G050840.5	Barley	cytosol, plastid	26.98	19.6
AT5G07240.2	Thale cress	plastid	21.29	19.24
AT4G23060.1	Thale cress	mitochondrion, nucleus	22.77	19.01
AT4G14750.3	Thale cress	cytosol	17.33	15.22
AT1G18840.1	Thale cress	cytosol	15.35	10.84
AT1G14380.1	Thale cress	cytosol	16.58	10.09
AT1G74690.1	Thale cress	cytosol	14.6	10.05
AT2G02790.1	Thale cress	cytosol	14.36	9.12
AT1G19870.1	Thale cress	nucleus	14.11	7.18

Protein Annotations

Gene3D:1.20.5.190	MapMan:35.2	EntrezGene:830275	UniProt:A0A1P8BH03	ProteinID:ANM70876.1	ProteinID:ANM70877.1
ArrayExpress:AT5G03960	EnsemblPlantsGene:AT5G03960	RefSeq:AT5G03960	TAIR:AT5G03960	RefSeq:AT5G03960-TAIR-G	EnsemblPlants:AT5G03960.2
InterPro:DUF4005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	Symbol:IQD12
InterPro:IQ_motif_EF-hand-BS	RefSeq:NP_001332454.1	RefSeq:NP_001332455.1	PFAM:PF00612	PFAM:PF13178	PFscan:PS50096
PANTHER:PTHR32295	PANTHER:PTHR32295:SF41	UniParc:UPI0001CA97B6	SEG:seg	:	:

Description

IQD12IQ-domain 12 [Source:TAIR;Acc:AT5G03960]

Coordinates

chr5:-:1068158..1070164

Molecular Weight (calculated)

46171.7 Da

IEP (calculated)

11.267

GRAVY (calculated)

-0.655

Length

404 amino acids

Sequence
(BLAST)

001: MAKRRSWFGW MKRLFICEAK ARAEKKPRRL RWVFKRLKLR PQLATCGQET RTLNEATQDQ RKHAMNVAIA TAAAAEAAVA AAKAAAEVVR MAGNAFTSQH
101: FVKKLAPNVA AIKIQSAFRA SLARKALRAL KALVRLQAIV RGRAVRRKVS ALLKSSHSNK ASTSNIIQRQ TERKHWSNTK SEIKEELQVS NHSLCNSKVK
201: CNGWDSSALT KEDIKAIWLR KQEGVIKRDR MLKYSRSQRE RRSPHMLVES LYAKDMGMRS CRLEHWGESK SAKSINSFLI PSEMLVPTKV KLRSLQRQDS
301: GDGQDSPFSF PRRSFSRLEQ SILEDESWFQ RSNGFQPYMS VTESAREKMR SLSTPRQRVG IMDSLFDNYK KDGDKVSLWS TFVCENSKIN NAKKSSLTTY
401: QHNC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.