Factsheet for VIT_00s0684g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G51380.1	Thale cress	mitochondrion	47.45	63.11
Bra012855.1-P	Field mustard	mitochondrion	46.72	62.14
CDX90650	Canola	mitochondrion	46.72	62.14
CDY29016	Canola	mitochondrion	45.99	61.16
KRH07958	Soybean	mitochondrion	56.93	55.32
PGSC0003DMT400009431	Potato	mitochondrion	48.91	51.15
CDX73724	Canola	mitochondrion	47.45	50.0
CDX78003	Canola	mitochondrion	50.37	45.39
Bra036812.1-P	Field mustard	mitochondrion	50.37	44.81
GSMUA_Achr1P02670_001	Banana	mitochondrion	41.61	39.86
GSMUA_Achr11P...	Banana	mitochondrion	46.72	32.16
OQU93295	Sorghum	plastid	37.23	18.02
Zm00001d048352_P001	Maize	mitochondrion	35.77	17.82
HORVU4Hr1G081190.1	Barley	mitochondrion	37.96	13.37
TraesCS5A01G502100.1	Wheat	cytosol, plastid	37.23	13.28
TraesCS4B01G330700.1	Wheat	mitochondrion	35.77	12.37
TraesCS4D01G327500.1	Wheat	mitochondrion	35.77	12.34
VIT_16s0100g00620.t01	Wine grape	cytosol	28.47	11.71
VIT_09s0002g03360.t01	Wine grape	cytosol, mitochondrion	32.85	11.19
VIT_14s0030g01880.t01	Wine grape	nucleus	31.39	11.0
VIT_11s0016g03030.t01	Wine grape	cytosol	32.85	10.34
VIT_05s0020g03980.t01	Wine grape	cytosol	34.31	10.13
VIT_02s0025g04120.t01	Wine grape	mitochondrion	35.77	9.92
VIT_13s0019g01830.t01	Wine grape	mitochondrion, nucleus	32.12	9.38
VIT_08s0007g05980.t01	Wine grape	cytosol	29.2	8.85
VIT_08s0007g05960.t01	Wine grape	cytosol	27.01	8.71
VIT_14s0108g00150.t01	Wine grape	nucleus	29.93	7.09
VIT_01s0026g01790.t01	Wine grape	cytosol	28.47	6.75
VIT_17s0000g05840.t01	Wine grape	endoplasmic reticulum, extracellular	29.2	6.42
VIT_18s0001g13870.t01	Wine grape	nucleus	27.74	4.8
Os05t0100008-00	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.20.5.190	EntrezGene:100854442	wikigene:100854442	MapMan:35.2	ProteinID:CBI35720	ProteinID:CBI35720.3
UniProt:D7TYZ4	EMBL:FN596308	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100854442	wikigene:LOC100854442	InterPro:P-loop_NTPase	PFAM:PF00612	PFscan:PS50096
PANTHER:PTHR32295	PANTHER:PTHR32295:SF86	SMART:SM00015	SUPFAM:SSF52540	UniParc:UPI00015CE3C0	ArrayExpress:VIT_00s0684g00020
EnsemblPlantsGene:VIT_00s0684g00020	EnsemblPlants:VIT_00s0684g00020.t01	RefSeq:XP_003635456	RefSeq:XP_003635456.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:-:34168471..34169117

Molecular Weight (calculated)

15528.0 Da

IEP (calculated)

11.274

GRAVY (calculated)

-0.307

Length

137 amino acids

Sequence
(BLAST)

001: MGTSRNWFGI VRTKFFTSSK TITVRHIATS PSYNEEPDVT EGGAIYSEEP NDGAPCLPSP RKKDLTKEDI AAIKIQAIFR GHLARRAYRA LRSLVKLQAL
101: VRGVCVRRQT RIALHCMHAL VRLQVRVRTR QLLQLDS

Best Arabidopsis Sequence Match ( AT3G51380.1 )
(BLAST)

001: MANSKRLFGV VRRKLLRRSQ SRITIIRSSA PETTREEIAA VKIQAFFRGH LARRAFKALK SLVKLQAVAR GVLVRRQARI ALHCMHALAR LQVRVRARQL
101: LSH

Arabidopsis Description

IQD20At3g51380 [Source:UniProtKB/TrEMBL;Acc:Q9SD11]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.