Factsheet for PGSC0003DMT400007855

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080470.2.1	Tomato	plastid	95.8	95.99
VIT_02s0025g04120.t01	Wine grape	mitochondrion	62.2	62.96
PGSC0003DMT400014796	Potato	cytosol	40.2	55.83
KRH03972	Soybean	cytosol	47.6	53.24
KRH77498	Soybean	cytosol, mitochondrion	42.0	53.03
KRH57246	Soybean	cytosol	46.0	51.69
GSMUA_Achr8P11920_001	Banana	cytosol	36.2	50.42
EES12687	Sorghum	cytosol, mitochondrion	45.4	48.61
TraesCS2B01G418900.1	Wheat	cytosol, mitochondrion	44.2	48.04
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	43.8	47.71
Zm00001d002630_P002	Maize	mitochondrion	43.4	47.48
Os04t0569900-01	Rice	cytosol, mitochondrion	44.0	47.41
TraesCS2D01G398300.1	Wheat	cytosol, mitochondrion	43.8	47.4
HORVU0Hr1G005320.2	Barley	cytosol	34.0	46.7
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	40.6	46.35
CDX98787	Canola	mitochondrion	26.4	44.59
Zm00001d026084_P001	Maize	mitochondrion	43.8	44.15
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	37.2	43.36
CDY41368	Canola	mitochondrion, plastid	35.8	42.62
CDX98786	Canola	nucleus	40.4	42.53
Bra019337.1-P	Field mustard	nucleus	40.0	42.46
CDX94150	Canola	nucleus	39.4	42.46
Bra020822.1-P	Field mustard	mitochondrion, plastid	35.6	42.38
CDX76341	Canola	mitochondrion, plastid	35.6	42.38
CDY41252	Canola	cytosol, mitochondrion	41.2	42.21
Bra013672.1-P	Field mustard	mitochondrion, nucleus	41.6	41.94
AT4G23060.1	Thale cress	mitochondrion, nucleus	40.4	41.74
CDY53133	Canola	nucleus	40.4	41.56
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	34.2	40.43
PGSC0003DMT400037043	Potato	mitochondrion, nucleus	35.4	37.18
PGSC0003DMT400009431	Potato	mitochondrion	8.2	31.3
PGSC0003DMT400000953	Potato	cytosol	21.8	29.95
PGSC0003DMT400042595	Potato	nucleus	8.2	26.97
PGSC0003DMT400033127	Potato	cytosol, mitochondrion	21.6	26.67
PGSC0003DMT400016500	Potato	nucleus	12.8	24.06
PGSC0003DMT400017589	Potato	cytosol, plastid	17.4	20.23
PGSC0003DMT400003322	Potato	cytosol	20.4	18.28
PGSC0003DMT400021096	Potato	nucleus	7.2	16.29
PGSC0003DMT400045444	Potato	cytosol, plastid	17.2	15.47
PGSC0003DMT400009545	Potato	nucleus	20.0	11.52

Protein Annotations

EnsemblPlants:PGSC0003DMT400007855	EnsemblPlantsGene:PGSC0003DMG400003036	EntrezGene:102580550	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF13
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	PGSC:PGSC0003DMG400003036	RefSeq:XP_006358875.1	SEG:seg
UniParc:UPI0002948F7E	UniProt:M0ZTM5	MapMan:35.2	:	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003036]

Coordinates

chr8:+:54179833..54183763

Molecular Weight (calculated)

54261.4 Da

IEP (calculated)

10.766

GRAVY (calculated)

-0.745

Length

500 amino acids

Sequence
(BLAST)

001: MGKASKWFRG LLGLKKQDPS SSSNQNPKPT KKKWSFVKSY REKDSNFVKG TDKESSNYGR VVSNSLQNGA VGCSVDSSNR AIAVAEATAV VAEAAIAAAQ
101: AAAAGVKLTN SGRATTTTTN GGAAAVTMWN GISLSSSAVV GKKKGAAAGN RENWAAVVIQ SLFRAYLSRR ALRALKGLVK LQALVRGHII RQQTADYLRQ
201: MQAISRAQSR ARAGRSQVSG SPHSSTKSVQ FLHDPTTPEK FEHVIRARSL KHDETSMLKR NTSKSNWKAI DSEKARIRPQ GSSARTSSID DEKSDKILEI
301: DTGKPHVTPK QRNLFHSSHL SLNSDQYSYS LTTSKESTAH QTVPSPSSCG NQPLSPLKFN EDLDEACFCT ADNSPQFYSA SSKGGSSKRG PFTPTKSDGS
401: RSYMSGYSDH PSYMSYTESS KAKVRSMSAP KQRPHYERSS STKRYSIHGC SESRNNSQKG SFYPNFTGKA YPGSGRLDRL GMPVIRADPS GFSGGLRHRY

Best Arabidopsis Sequence Match ( AT5G62070.1 )
(BLAST)

001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV

Arabidopsis Description

IQD23At5g62070/mtg10_90 [Source:UniProtKB/TrEMBL;Acc:Q9FIT1]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.