Factsheet for GSMUA_Achr4P21190_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14930_001	Banana	cytosol	53.23	28.23
GSMUA_Achr1P02670_001	Banana	mitochondrion	18.91	26.57
GSMUA_Achr8P26800_001	Banana	cytosol	48.76	26.2
Zm00001d048437_P002	Maize	mitochondrion	48.26	24.49
KXG40135	Sorghum	cytosol, mitochondrion	49.25	23.8
TraesCS2A01G470100.1	Wheat	cytosol, mitochondrion	50.75	23.5
TraesCS2B01G492900.1	Wheat	cytosol, mitochondrion	50.25	23.17
Os03t0161400-01	Rice	cytosol, mitochondrion	46.77	22.93
Solyc09g082560.2.1	Tomato	nucleus	53.23	22.91
TraesCS2D01G470000.1	Wheat	cytosol, mitochondrion	49.75	22.88
HORVU2Hr1G106550.2	Barley	mitochondrion	49.25	22.81
Zm00001d032932_P001	Maize	mitochondrion	47.76	22.43
GSMUA_Achr8P27610_001	Banana	cytosol, mitochondrion	36.82	21.83
Os10t0420200-01	Rice	mitochondrion	35.82	21.18
GSMUA_Achr8P11920_001	Banana	cytosol	37.81	21.17
TraesCS4A01G028700.1	Wheat	cytosol, mitochondrion	46.77	20.66
GSMUA_Achr7P13670_001	Banana	cytosol, mitochondrion	38.31	20.42
GSMUA_AchrUn_...	Banana	cytosol	38.31	20.32
HORVU4Hr1G073480.2	Barley	cytosol, mitochondrion	45.27	20.0
GSMUA_Achr6P14870_001	Banana	cytosol, mitochondrion	37.31	20.0
GSMUA_Achr9P06040_001	Banana	cytosol	37.81	19.79
HORVU4Hr1G056380.1	Barley	cytosol, mitochondrion	32.84	19.76
GSMUA_Achr6P26400_001	Banana	cytosol, mitochondrion	38.81	19.65
GSMUA_Achr11P...	Banana	mitochondrion	19.4	19.6
TraesCS4B01G277100.2	Wheat	cytosol, mitochondrion	46.27	19.29
TraesCS4D01G275700.3	Wheat	cytosol, mitochondrion	46.27	19.25
GSMUA_Achr8P20170_001	Banana	cytosol, mitochondrion	38.31	19.25
GSMUA_Achr3P17570_001	Banana	cytosol, mitochondrion	38.31	19.06
OQU91764	Sorghum	mitochondrion, plastid	47.76	19.01
HORVU6Hr1G003870.1	Barley	cytosol, mitochondrion	28.86	18.83
GSMUA_Achr10P...	Banana	cytosol	40.8	18.59
GSMUA_Achr5P06520_001	Banana	cytosol, mitochondrion	37.31	18.47
PGSC0003DMT400016500	Potato	nucleus	24.38	18.42
GSMUA_Achr3P18210_001	Banana	cytosol, mitochondrion	38.81	18.18
GSMUA_Achr5P13660_001	Banana	cytosol, mitochondrion	39.3	18.04
GSMUA_Achr2P00850_001	Banana	nucleus, plastid	7.96	17.78
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	36.32	17.26
GSMUA_Achr1P19900_001	Banana	cytosol	19.9	17.17
GSMUA_Achr5P20090_001	Banana	cytosol, mitochondrion	38.81	16.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	30.85	16.8
HORVU2Hr1G106540.1	Barley	cytosol, nucleus	21.89	14.57
GSMUA_Achr8P19690_001	Banana	mitochondrion	19.4	14.18
GSMUA_Achr3P17450_001	Banana	nucleus	30.85	13.81
GSMUA_Achr4P30750_001	Banana	mitochondrion	17.91	13.43
GSMUA_Achr4P30780_001	Banana	cytosol, mitochondrion	31.34	11.37
GSMUA_Achr2P15790_001	Banana	cytosol	30.35	10.65
GSMUA_Achr8P26180_001	Banana	mitochondrion	26.87	10.29
GSMUA_AchrUn_...	Banana	mitochondrion	21.89	8.7
GSMUA_Achr7P06540_001	Banana	endoplasmic reticulum, plasma membrane	30.35	7.21
GSMUA_Achr1P06080_001	Banana	nucleus	27.36	7.06
GSMUA_Achr3P11240_001	Banana	nucleus	26.37	6.79
GSMUA_Achr1P19910_001	Banana	nucleus	10.95	3.68

Protein Annotations

EnsemblPlants:GSMUA_Achr4P21190_001	EnsemblPlants:GSMUA_Achr4T21190_001	EnsemblPlantsGene:GSMUA_Achr4G21190_001	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11
PFAM:PF00612	PFAM:PF13178	PFscan:PS50096	UniParc:UPI000295B2E8	UniProt:M0SQT2	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_20.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G21190_001]

Coordinates

chr4:+:21685255..21686047

Molecular Weight (calculated)

22235.0 Da

IEP (calculated)

11.294

GRAVY (calculated)

-0.559

Length

201 amino acids

Sequence
(BLAST)

001: MEFRRPTATS KDSQSPEVDK RLHAMVMKIE DNAAMKIQAA FRSYLARKAL CALKGLVKLQ AMVRGQMVRQ QAATTLRCMQ ALITAQAGVR TQRTRMLEEA
101: QGTSQSAKAV EMDLGEGCSR SSPRWTSACS MHHTPMSSFG ASSDCAFPNY MANTESSRAK ARWQSAPKQR ADMVEMKASR KRASVEGRKT ARSARILRPA
201: T

Best Arabidopsis Sequence Match ( AT4G14750.3 )
(BLAST)

001: MVLGCPKREA VKEFGVQCLK QENVCPIITS RNQTHTHTHI TISSSLTLHN GGLSLQKIIM GKTSKWFRSL LTGKKERTKE HIIQSECVFT SSIPGTPKEK
101: RRWSFRRSSA TGPPPPACAI TLKDSPPPPP PPPPPPPLQQ PFVVEIVDNE DEQIKNVSAE EIEEFAAIKI QACYRSHLAR KALRALKGLV KLQALVRGHL
201: VRKQATATLR CMQALITLQA KAREQRIRMI GGDSTNPRTS IHKTRINNFY HENEENIKIV EMDIQSKMYS PAPSALTEMS PRAYSSHFED CNSFNTAQSS
301: PQCFSRFKEY YNGDTLSSYD YPLFPNYMAN TQSSKAKARS QSAPKQRPPE IYEKQMSGRR RSSMEAPRNN GVPRAVRMQR SSSQLGSNTA KESQQHHHHQ
401: YYPWMAIKLD RSNISLMESE CGSTSTVMTN TNYGRHVDVS PERLLVSQEN MNFEISTYIS

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.