CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032932_P001	Maize	mitochondrion	73.47	86.68
TraesCS2D01G470000.1	Wheat	cytosol, mitochondrion	56.44	65.22
TraesCS2A01G470100.1	Wheat	cytosol, mitochondrion	55.64	64.75
HORVU2Hr1G106550.2	Barley	mitochondrion	55.45	64.52
TraesCS2B01G492900.1	Wheat	cytosol, mitochondrion	55.45	64.22
Os10t0420200-01	Rice	mitochondrion	39.6	58.82
KXG40135	Sorghum	cytosol, mitochondrion	47.33	57.45
HORVU6Hr1G003870.1	Barley	cytosol, mitochondrion	34.65	56.82
HORVU4Hr1G056380.1	Barley	cytosol, mitochondrion	37.23	56.29
GSMUA_Achr4P21190_001	Banana	cytosol	19.01	47.76
EER93770	Sorghum	cytosol, mitochondrion	42.38	43.67
Solyc09g082560.2.1	Tomato	nucleus	39.6	42.83
PGSC0003DMT400016500	Potato	nucleus	20.99	39.85
OQU79535	Sorghum	cytosol, mitochondrion	34.65	37.8
EES12687	Sorghum	cytosol, mitochondrion	29.5	31.91
KXG21487	Sorghum	cytosol, mitochondrion	28.51	29.21
EES02320	Sorghum	mitochondrion	26.73	28.12
KXG33342	Sorghum	mitochondrion	20.99	26.77
EER94844	Sorghum	cytosol	24.75	25.05
KXG22374	Sorghum	mitochondrion	19.21	24.31
KXG30089	Sorghum	cytosol, mitochondrion, plastid	10.3	23.11
OQU93295	Sorghum	plastid	10.69	19.08
KXG22418	Sorghum	cytosol, plastid	17.62	15.37
KXG30090	Sorghum	mitochondrion	8.71	14.29
KXG33252	Sorghum	cytosol	15.05	13.6
EES11606	Sorghum	nucleus	17.82	10.16

Protein Annotations

EnsemblPlants:OQU91764	EnsemblPlantsGene:SORBI_3001G244400	Gene3D:1.20.5.190	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:DUF4005	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR32295	PANTHER:PTHR32295:SF11	PFAM:PF00612
PFAM:PF13178	PFscan:PS50096	ProteinID:OQU91764	ProteinID:OQU91764.1	SEG:seg	SMART:SM00015
UniParc:UPI000B8BAB29	UniProt:A0A1Z5S775	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:25479888..25482501

Molecular Weight (calculated)

53502.9 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.430

Length

505 amino acids

Sequence
(BLAST)

001: MGKAGRWLRS ILAGRKDKAK ALQPYPQQQG DATPLPAAAA ASSPREKKRW SFRRPAQQGK VNSNTAPSPL SSSLEPSARE LDQSEHAVAV AVAAAAAADA
101: AVMAAAEAAA AVVRLTVTAA EDSHLSVTCC PVEAAAARII QATFRGYLAR KALCALRGLV KLQALVRGQL VRRQATATLR RMQALVDAQS RLRAQRARML
201: DADHATAPPA AYQPRRSPQH PIPIPRRRSS YVCPTHTHTS MTDSAFCPPG EVADITRFRH VGDMQEVMDR SSGEEHVKIV EMDVGEPARR GRSSCSAAAT
301: ESRERRLAEY YHGGSGGGGV GQCSPAPSSA AFFGAELSPP RTYSGHFDDV FAFDPAATAR SSPYVAPYDD AADGYGGVDV PSYMANTESS RAKARSQSAP
401: RQRTDAAALE RQPSSRRRGG QGGGAPRKMM QRSSSHIGVP AAAAACGYGY GYGYGYQHAQ PWAGVRLDRS SASVVGSECG STSSVLTAAT VGYCRSLVGF
501: ERGHY

Best Arabidopsis Sequence Match ( AT4G14750.3 )
(BLAST)

001: MVLGCPKREA VKEFGVQCLK QENVCPIITS RNQTHTHTHI TISSSLTLHN GGLSLQKIIM GKTSKWFRSL LTGKKERTKE HIIQSECVFT SSIPGTPKEK
101: RRWSFRRSSA TGPPPPACAI TLKDSPPPPP PPPPPPPLQQ PFVVEIVDNE DEQIKNVSAE EIEEFAAIKI QACYRSHLAR KALRALKGLV KLQALVRGHL
201: VRKQATATLR CMQALITLQA KAREQRIRMI GGDSTNPRTS IHKTRINNFY HENEENIKIV EMDIQSKMYS PAPSALTEMS PRAYSSHFED CNSFNTAQSS
301: PQCFSRFKEY YNGDTLSSYD YPLFPNYMAN TQSSKAKARS QSAPKQRPPE IYEKQMSGRR RSSMEAPRNN GVPRAVRMQR SSSQLGSNTA KESQQHHHHQ
401: YYPWMAIKLD RSNISLMESE CGSTSTVMTN TNYGRHVDVS PERLLVSQEN MNFEISTYIS

Arabidopsis Description

IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.