Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G028700.1 | Wheat | cytosol, mitochondrion | 91.65 | 91.65 |
| TraesCS4D01G275700.3 | Wheat | cytosol, mitochondrion | 90.77 | 85.51 |
| TraesCS4B01G277100.2 | Wheat | cytosol, mitochondrion | 90.55 | 85.48 |
| Zm00001d048437_P002 | Maize | mitochondrion | 57.36 | 65.91 |
| Os03t0161400-01 | Rice | cytosol, mitochondrion | 59.34 | 65.85 |
| KXG40135 | Sorghum | cytosol, mitochondrion | 59.12 | 64.66 |
| HORVU2Hr1G106550.2 | Barley | mitochondrion | 46.37 | 48.62 |
| GSMUA_Achr4P21190_001 | Banana | cytosol | 20.0 | 45.27 |
| HORVU6Hr1G003870.1 | Barley | cytosol, mitochondrion | 28.35 | 41.88 |
| HORVU4Hr1G056380.1 | Barley | cytosol, mitochondrion | 30.33 | 41.32 |
| HORVU5Hr1G093430.4 | Barley | cytosol | 40.66 | 39.53 |
| HORVU2Hr1G106540.1 | Barley | cytosol, nucleus | 25.49 | 38.41 |
| Solyc09g082560.2.1 | Tomato | nucleus | 39.34 | 38.33 |
| PGSC0003DMT400016500 | Potato | nucleus | 19.34 | 33.08 |
| HORVU3Hr1G070750.1 | Barley | mitochondrion | 17.14 | 31.2 |
| HORVU0Hr1G005320.2 | Barley | cytosol | 22.64 | 28.3 |
| HORVU3Hr1G070760.1 | Barley | mitochondrion | 23.3 | 27.97 |
| HORVU1Hr1G028250.6 | Barley | mitochondrion | 28.57 | 24.67 |
| HORVU3Hr1G019630.3 | Barley | endoplasmic reticulum, plastid | 29.89 | 23.73 |
| HORVU1Hr1G075880.4 | Barley | cytosol | 17.8 | 23.48 |
| HORVU7Hr1G082120.1 | Barley | cytosol | 20.44 | 21.38 |
| HORVU5Hr1G050840.5 | Barley | cytosol, plastid | 21.76 | 17.81 |
| HORVU1Hr1G080360.4 | Barley | mitochondrion | 16.92 | 13.07 |
| HORVU4Hr1G081190.1 | Barley | mitochondrion | 10.99 | 12.85 |
| HORVU3Hr1G067750.8 | Barley | cytosol, plastid | 15.38 | 12.59 |
| HORVU2Hr1G109850.3 | Barley | nucleus | 15.6 | 9.93 |
| HORVU2Hr1G124440.1 | Barley | cytosol | 0.22 | 1.64 |
Protein Annotations
| EMBL:AK360168 | EnsemblPlants:HORVU4Hr1G073480.2 | EnsemblPlantsGene:HORVU4Hr1G073480 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:DUF4005 | InterPro:IPR000048 | InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR32295 | PANTHER:PTHR32295:SF91 | PFAM:PF00612 |
| PFAM:PF13178 | PFscan:PS50096 | SEG:seg | SMART:SM00015 | UniParc:UPI0002005870 | UniProt:F2D8F6 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D8F6]
Coordinates
chrchr4H:-:590112563..590115066
Molecular Weight (calculated)
48828.4 Da
IEP (calculated)
11.964
GRAVY (calculated)
-0.646
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKAGRWLRN FLAGGRKDGR RDRPHAEAAT GPGPGPGATP REKRWSFRRP VVLTPDQPGR GVVPRDAAGG VGASRSSATS EAGFDEKKRA VAVAVVTASA
101: ADVAGAAAQA AATVARLSSR KAAPPLPPPA SLIAEAAAAV RIQASFRGYL ARAALCALRG IVKLQALVRG QLVRKQAKAT LRCMQALLAA QSQLRAQRMR
201: FLQVQDHHPH HTPPPRPRPS SSQHSRHRRS SYEMDRSSEE NVKIVEMDSG EQPARRGVAR GGDRQYSSVE HHHGGRCSPA PSAMTELSPR TSSWHVDDHI
301: SFGTAHSSPH SHNAPAAMTE AAASDLPFPS YMSNTESSRA KARSQSAPRQ RAAAEALERQ PSRRKGAEHR SVPRGARMQR SSSQQQAGSA PRQSPFFHRP
401: WSSSTSVRLD TSTASLRDSE CGSTTSSVLT AATTVSTVYS RTRSLVGFEV RRALY
101: ADVAGAAAQA AATVARLSSR KAAPPLPPPA SLIAEAAAAV RIQASFRGYL ARAALCALRG IVKLQALVRG QLVRKQAKAT LRCMQALLAA QSQLRAQRMR
201: FLQVQDHHPH HTPPPRPRPS SSQHSRHRRS SYEMDRSSEE NVKIVEMDSG EQPARRGVAR GGDRQYSSVE HHHGGRCSPA PSAMTELSPR TSSWHVDDHI
301: SFGTAHSSPH SHNAPAAMTE AAASDLPFPS YMSNTESSRA KARSQSAPRQ RAAAEALERQ PSRRKGAEHR SVPRGARMQR SSSQQQAGSA PRQSPFFHRP
401: WSSSTSVRLD TSTASLRDSE CGSTTSSVLT AATTVSTVYS RTRSLVGFEV RRALY
001: MVLGCPKREA VKEFGVQCLK QENVCPIITS RNQTHTHTHI TISSSLTLHN GGLSLQKIIM GKTSKWFRSL LTGKKERTKE HIIQSECVFT SSIPGTPKEK
101: RRWSFRRSSA TGPPPPACAI TLKDSPPPPP PPPPPPPLQQ PFVVEIVDNE DEQIKNVSAE EIEEFAAIKI QACYRSHLAR KALRALKGLV KLQALVRGHL
201: VRKQATATLR CMQALITLQA KAREQRIRMI GGDSTNPRTS IHKTRINNFY HENEENIKIV EMDIQSKMYS PAPSALTEMS PRAYSSHFED CNSFNTAQSS
301: PQCFSRFKEY YNGDTLSSYD YPLFPNYMAN TQSSKAKARS QSAPKQRPPE IYEKQMSGRR RSSMEAPRNN GVPRAVRMQR SSSQLGSNTA KESQQHHHHQ
401: YYPWMAIKLD RSNISLMESE CGSTSTVMTN TNYGRHVDVQ GNNNMY
101: RRWSFRRSSA TGPPPPACAI TLKDSPPPPP PPPPPPPLQQ PFVVEIVDNE DEQIKNVSAE EIEEFAAIKI QACYRSHLAR KALRALKGLV KLQALVRGHL
201: VRKQATATLR CMQALITLQA KAREQRIRMI GGDSTNPRTS IHKTRINNFY HENEENIKIV EMDIQSKMYS PAPSALTEMS PRAYSSHFED CNSFNTAQSS
301: PQCFSRFKEY YNGDTLSSYD YPLFPNYMAN TQSSKAKARS QSAPKQRPPE IYEKQMSGRR RSSMEAPRNN GVPRAVRMQR SSSQLGSNTA KESQQHHHHQ
401: YYPWMAIKLD RSNISLMESE CGSTSTVMTN TNYGRHVDVQ GNNNMY
Arabidopsis Description
IQD19IQ-domain 19 [Source:TAIR;Acc:AT4G14750]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.