Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g026110.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | Solyc03g026110.2.1 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g072270.1.1 | Tomato | cytosol | 91.33 | 87.82 |
| AT1G12310.1 | Thale cress | cytosol | 84.67 | 85.81 |
| CDY30070 | Canola | cytosol | 84.67 | 85.81 |
| CDX98074 | Canola | cytosol | 84.67 | 85.81 |
| Bra026976.1-P | Field mustard | cytosol | 84.0 | 85.14 |
| CDY21044 | Canola | cytosol | 84.0 | 85.14 |
| CDY26556 | Canola | cytosol | 84.0 | 85.14 |
| CDY31259 | Canola | cytosol | 84.0 | 85.14 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 83.33 | 85.03 |
| CDY15991 | Canola | cytosol | 83.33 | 84.46 |
| Bra019756.1-P | Field mustard | cytosol | 83.33 | 84.46 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 82.67 | 84.35 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 82.67 | 84.35 |
| AT1G62820.1 | Thale cress | cytosol | 82.67 | 83.78 |
| OQU79799 | Sorghum | cytosol | 76.67 | 77.7 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 75.33 | 76.35 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 74.0 | 75.0 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 73.33 | 74.32 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 73.33 | 74.32 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 73.33 | 74.32 |
| Os08t0117400-01 | Rice | plasma membrane | 72.67 | 73.65 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 72.0 | 72.97 |
| KRH04023 | Soybean | cytosol | 70.67 | 72.11 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 72.67 | 55.9 |
| Solyc10g081170.1.1 | Tomato | extracellular | 50.0 | 50.34 |
| Solyc11g072240.1.1 | Tomato | cytosol | 49.33 | 49.66 |
| Solyc01g008950.2.1 | Tomato | nucleus | 49.33 | 49.66 |
| Solyc12g099990.1.1 | Tomato | nucleus | 49.33 | 49.66 |
| Solyc10g077010.1.1 | Tomato | cytosol | 49.33 | 49.66 |
| Solyc03g098050.2.1 | Tomato | nucleus | 47.33 | 47.65 |
| Solyc06g053930.2.1 | Tomato | cytosol | 41.33 | 41.61 |
| Solyc01g105630.2.1 | Tomato | cytosol | 36.0 | 36.73 |
| Solyc03g005240.1.1 | Tomato | cytosol | 36.0 | 35.29 |
| Solyc03g097100.1.1 | Tomato | cytosol | 34.67 | 31.9 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 34.67 | 30.95 |
| Solyc03g114420.1.1 | Tomato | cytosol | 30.67 | 26.9 |
| Solyc04g026350.2.1 | Tomato | cytosol | 30.67 | 26.59 |
| Solyc01g010020.2.1 | Tomato | cytosol | 28.0 | 26.09 |
Protein Annotations
| EnsemblPlants:Solyc03g083520.2.1 | EnsemblPlantsGene:Solyc03g083520.2 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI0002768CDA | UniProt:K4BIC8 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3:+:53464171..53468631
Molecular Weight (calculated)
16928.3 Da
IEP (calculated)
4.653
GRAVY (calculated)
-0.309
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDLSNDQI SSMKEAFTLF DTDGDGKIAP SELGILMRSL GGNPTQAQLK SIIAEEKLNA PFDFNRFLEL MSKHLKPEPF DRQLRDAFKV LDKDSTGYVV
101: VADLKHILTS IGEKLEASEF DEWIREVDVG SDGKIKYEEF IARMVAKWVI
101: VADLKHILTS IGEKLEASEF DEWIREVDVG SDGKIKYEEF IARMVAKWVI
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.