Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2B01G418900.1 | |
| TraesCS2D01G398300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | TraesCS2B01G418900.1 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | TraesCS2D01G398300.1 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 99.32 | 99.32 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 98.65 | 98.65 |
| Os08t0117400-01 | Rice | plasma membrane | 95.95 | 95.95 |
| OQU79799 | Sorghum | cytosol | 92.57 | 92.57 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 91.89 | 91.89 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 91.22 | 91.22 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 80.41 | 80.41 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 76.35 | 76.87 |
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 76.35 | 76.87 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 75.68 | 76.19 |
| PGSC0003DMT400070433 | Potato | cytosol | 75.0 | 75.51 |
| CDY30070 | Canola | cytosol | 75.0 | 75.0 |
| CDX98074 | Canola | cytosol | 75.0 | 75.0 |
| CDY21044 | Canola | cytosol | 74.32 | 74.32 |
| CDY31259 | Canola | cytosol | 74.32 | 74.32 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 75.0 | 74.0 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 97.3 | 73.85 |
| Bra019756.1-P | Field mustard | cytosol | 73.65 | 73.65 |
| Bra026976.1-P | Field mustard | cytosol | 72.97 | 72.97 |
| CDY26556 | Canola | cytosol | 72.97 | 72.97 |
| AT1G12310.1 | Thale cress | cytosol | 72.97 | 72.97 |
| CDY15991 | Canola | cytosol | 72.3 | 72.3 |
| Solyc11g072270.1.1 | Tomato | cytosol | 74.32 | 70.51 |
| AT1G62820.1 | Thale cress | cytosol | 69.59 | 69.59 |
| KRH04023 | Soybean | cytosol | 63.51 | 63.95 |
| TraesCS3D01G188600.1 | Wheat | cytosol | 47.97 | 42.52 |
| TraesCS3D01G328300.1 | Wheat | cytosol | 47.97 | 39.01 |
| TraesCS5D01G068100.1 | Wheat | cytosol | 42.57 | 38.65 |
| TraesCS3D01G194500.2 | Wheat | cytosol | 39.86 | 37.11 |
| TraesCS5D01G068000.1 | Wheat | cytosol | 41.89 | 36.9 |
| TraesCS5D01G392200.1 | Wheat | cytosol | 37.84 | 36.13 |
| TraesCS5D01G153400.1 | Wheat | cytosol | 43.92 | 36.11 |
| TraesCS2D01G173900.1 | Wheat | cytosol, mitochondrion | 31.08 | 27.38 |
| TraesCS1D01G308000.1 | Wheat | cytosol | 27.7 | 27.33 |
| TraesCS4D01G126100.1 | Wheat | cytosol | 43.24 | 26.56 |
| TraesCS1D01G197600.1 | Wheat | cytosol | 31.08 | 23.71 |
| TraesCS3D01G217900.1 | Wheat | cytosol | 27.7 | 16.08 |
| TraesCS5D01G392100.1 | Wheat | mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G313100.1 | EnsemblPlantsGene:TraesCS7D01G313100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 |
| PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:396981537..396981983
Molecular Weight (calculated)
16760.9 Da
IEP (calculated)
4.780
GRAVY (calculated)
-0.403
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKELSEEQ IASMREAFSL FDTDGDGRIA PSELGVLMRS LGGNPTQAQL RDITAQEKLT APFDFKRFLE LMRAHLRPEP FDRPLRDAFR VLDKDASGTV
101: SVADLRHVLT SIGEKLEPHE FDEWIREVDV AADGTIRYDD FIRRIVAK
101: SVADLRHVLT SIGEKLEPHE FDEWIREVDV AADGTIRYDD FIRRIVAK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.