Factsheet for Zm00001d049665_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002630_P002
Zm00001d026084_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12310.1	Zm00001d002630_P002	AT5G62070.1	21798944
AT1G12310.1	Zm00001d026084_P001	AT5G62070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	95.27	95.27
OQU79799	Sorghum	cytosol	94.59	94.59
Os08t0117400-01	Rice	plasma membrane	93.92	93.92
TraesCS7D01G313100.1	Wheat	cytosol	91.89	91.89
TraesCS7B01G217200.1	Wheat	cytosol, plastid	91.22	91.22
TraesCS7A01G316100.1	Wheat	cytosol, unclear	90.54	90.54
GSMUA_Achr3P26750_001	Banana	cytosol, plasma membrane	82.43	82.43
VIT_02s0241g00140.t01	Wine grape	cytosol	75.68	76.19
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	75.68	76.19
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	75.0	75.51
CDY31259	Canola	cytosol	75.0	75.0
CDY21044	Canola	cytosol	75.0	75.0
PGSC0003DMT400070433	Potato	cytosol	74.32	74.83
CDY30070	Canola	cytosol	74.32	74.32
CDY26556	Canola	cytosol	74.32	74.32
CDX98074	Canola	cytosol	74.32	74.32
Bra026976.1-P	Field mustard	cytosol	74.32	74.32
CDY15991	Canola	cytosol	73.65	73.65
Solyc03g083520.2.1	Tomato	cytosol, nucleus	74.32	73.33
Bra019756.1-P	Field mustard	cytosol	72.97	72.97
AT1G12310.1	Thale cress	cytosol	72.97	72.97
HORVU7Hr1G075240.1	Barley	cytosol, plastid	92.57	70.26
Solyc11g072270.1.1	Tomato	cytosol	73.65	69.87
AT1G62820.1	Thale cress	cytosol	69.59	69.59
KRH04023	Soybean	cytosol	61.49	61.9
Zm00001d008278_P001	Maize	cytosol	38.51	44.88
Zm00001d038545_P001	Maize	cytosol, mitochondrion	41.22	40.94
Zm00001d043144_P001	Maize	plasma membrane	50.0	40.44
Zm00001d047597_P001	Maize	cytosol	38.51	38.78
Zm00001d041430_P001	Maize	cytosol	41.89	36.69
Zm00001d038543_P004	Maize	plastid	39.86	34.91
Zm00001d005003_P002	Maize	cytosol	40.54	33.33
Zm00001d028948_P001	Maize	cytosol	42.57	31.98
Zm00001d052415_P001	Maize	cytosol	33.11	31.01
Zm00001d022160_P003	Maize	cytosol, mitochondrion	32.43	27.91
Zm00001d033980_P001	Maize	cytosol	28.38	26.75
Zm00001d010649_P001	Maize	extracellular	24.32	25.35
Zm00001d014271_P001	Maize	cytosol	30.41	25.14
Zm00001d039110_P001	Maize	cytosol	29.05	25.0
Zm00001d053188_P001	Maize	cytosol	14.19	19.27
Zm00001d044411_P001	Maize	plastid	28.38	17.95

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100272455	MapMan:35.1	ProteinID:AQK51034.1	UniProt:B4FNQ8	EMBL:BT038746
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EMBL:EU964152	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23050	PANTHER:PTHR23050:SF214	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00017B6C9E	EnsemblPlantsGene:Zm00001d049665
EnsemblPlants:Zm00001d049665_P001	EnsemblPlants:Zm00001d049665_T001	:	:	:	:

Description

Probable calcium-binding protein CML13

Coordinates

chr4:+:39245896..39246342

Molecular Weight (calculated)

16639.8 Da

IEP (calculated)

4.751

GRAVY (calculated)

-0.344

Length

148 amino acids

Sequence
(BLAST)

001: MGGKDLTEEQ IASMREAFTL FDTDGDGRIA PTELGVLMRS LGGNPTQAQL RDIAAQEKLT APFDFPRFLG LMRAHLRPEP FDRPLRDAFR VLDKDGSGTV
101: AVADLRHVLT SIGEKLEVHE FDEWIREVDV APDGTIRYDD FIRRIVAK

Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Arabidopsis Description

CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.