Factsheet for Os08t0117400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0569900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12310.1	Os04t0569900-01	AT5G62070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G217200.1	Wheat	cytosol, plastid	96.62	96.62
TraesCS7A01G316100.1	Wheat	cytosol, unclear	95.95	95.95
TraesCS7D01G313100.1	Wheat	cytosol	95.95	95.95
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	93.92	93.92
Zm00001d049665_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	93.92	93.92
OQU79799	Sorghum	cytosol	93.92	93.92
GSMUA_Achr3P26750_001	Banana	cytosol, plasma membrane	84.46	84.46
VIT_02s0241g00140.t01	Wine grape	cytosol	78.38	78.91
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.38	78.91
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	77.7	78.23
CDX98074	Canola	cytosol	75.68	75.68
CDY30070	Canola	cytosol	75.68	75.68
CDY21044	Canola	cytosol	75.0	75.0
CDY31259	Canola	cytosol	75.0	75.0
HORVU7Hr1G075240.1	Barley	cytosol, plastid	98.65	74.87
AT1G12310.1	Thale cress	cytosol	74.32	74.32
Bra019756.1-P	Field mustard	cytosol	74.32	74.32
PGSC0003DMT400070433	Potato	cytosol	73.65	74.15
CDY26556	Canola	cytosol	73.65	73.65
Bra026976.1-P	Field mustard	cytosol	73.65	73.65
CDY15991	Canola	cytosol	72.97	72.97
Solyc03g083520.2.1	Tomato	cytosol, nucleus	73.65	72.67
AT1G62820.1	Thale cress	cytosol	70.95	70.95
Solyc11g072270.1.1	Tomato	cytosol	72.97	69.23
KRH04023	Soybean	cytosol	64.86	65.31
Os05t0491100-01	Rice	cytosol, extracellular	48.65	48.32
Os07t0687200-02	Rice	cytosol	47.97	47.65
Os03t0319300-01	Rice	cytosol, extracellular, nucleus	47.97	47.65
Os01t0279300-01	Rice	cytosol, plasma membrane, plastid	47.97	47.65
Os01t0267900-01	Rice	cytosol	47.97	47.65
Os01t0810300-01	Rice	plasma membrane	47.3	37.43
Os03t0743500-02	Rice	nucleus	38.51	37.01
Os12t0603800-00	Rice	cytosol	41.22	36.75
Os05t0491000-01	Rice	cytosol	33.78	32.26
Os11t0586200-00	Rice	cytosol	32.43	31.79
Os10t0389000-01	Rice	plasma membrane	31.08	24.08
Os05t0577500-01	Rice	cytosol, mitochondrion	27.03	23.12
Os07t0618800-01	Rice	plasma membrane	31.76	22.49
Os01t0505600-01	Rice	cytosol	31.08	21.8
Os01t0604500-01	Rice	cytosol	27.7	16.47

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EntrezGene:4344525	EMBL:AK059891	EMBL:AK103863	EMBL:AY224521
ProteinID:BAD33100.1	ProteinID:BAF22776.1	ProteinID:BAT03565.1	ProteinID:EAZ41322.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0046872	InterPro:IPR002048
EnsemblPlantsGene:Os08g0117400	EnsemblPlants:Os08t0117400-01	PFAM:PF13405	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23050	PANTHER:PTHR23050:SF214	UniProt:Q84VG0	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000005F8F5
RefSeq:XP_015649878.1	:	:	:	:	:

Description

CALMODULIN-LIKE PROTEIN 7Similar to Calmodulin 1 (Fragment). (Os08t0117400-01);Similar to Calmodulin 1 (Fragment). (Os08t0117400-02)

Coordinates

chr8:-:969318..970248

Molecular Weight (calculated)

16683.8 Da

IEP (calculated)

4.660

GRAVY (calculated)

-0.411

Length

148 amino acids

Sequence
(BLAST)

001: MGGKELSEEQ VASMREAFSL FDTDGDGRIA PSELGVLMRS LGGNPTQAQL RDIAAQEKLT APFDFPRFLD LMRAHLRPEP FDRPLRDAFR VLDKDASGTV
101: SVADLRHVLT SIGEKLEPHE FDEWIREVDV APDGTIRYDD FIRRIVAK

Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Arabidopsis Description

CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.