Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_16s0100g00620.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G12310.1 | VIT_16s0100g00620.t01 | AT5G62070.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 90.48 | 90.48 |
KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 88.44 | 88.44 |
CDX98074 | Canola | cytosol | 87.76 | 87.16 |
CDY30070 | Canola | cytosol | 87.76 | 87.16 |
AT1G12310.1 | Thale cress | cytosol | 87.76 | 87.16 |
Bra019756.1-P | Field mustard | cytosol | 87.07 | 86.49 |
Bra026976.1-P | Field mustard | cytosol | 87.07 | 86.49 |
CDY21044 | Canola | cytosol | 87.07 | 86.49 |
CDY26556 | Canola | cytosol | 87.07 | 86.49 |
CDY31259 | Canola | cytosol | 87.07 | 86.49 |
CDY15991 | Canola | cytosol | 86.39 | 85.81 |
PGSC0003DMT400070433 | Potato | cytosol | 84.35 | 84.35 |
AT1G62820.1 | Thale cress | cytosol | 83.67 | 83.11 |
Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 84.35 | 82.67 |
Solyc11g072270.1.1 | Tomato | cytosol | 84.35 | 79.49 |
Os08t0117400-01 | Rice | plasma membrane | 78.91 | 78.38 |
Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 78.23 | 77.7 |
TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 78.23 | 77.7 |
OQU79799 | Sorghum | cytosol | 77.55 | 77.03 |
GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 77.55 | 77.03 |
TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 77.55 | 77.03 |
TraesCS7D01G313100.1 | Wheat | cytosol | 76.87 | 76.35 |
Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 76.19 | 75.68 |
KRH04023 | Soybean | cytosol | 73.47 | 73.47 |
HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 78.91 | 59.49 |
VIT_08s0040g00470.t01 | Wine grape | cytosol | 51.02 | 50.34 |
VIT_06s0009g01910.t01 | Wine grape | cytosol | 51.02 | 49.02 |
VIT_17s0000g00580.t01 | Wine grape | cytosol | 49.66 | 48.99 |
VIT_05s0020g04420.t01 | Wine grape | cytosol | 40.14 | 39.6 |
VIT_14s0030g02150.t01 | Wine grape | cytosol | 38.78 | 37.25 |
VIT_00s0179g00280.t01 | Wine grape | cytosol | 34.69 | 34.23 |
VIT_02s0012g02060.t01 | Wine grape | cytosol | 31.97 | 28.83 |
VIT_05s0094g01240.t01 | Wine grape | cytosol | 29.93 | 26.67 |
VIT_16s0039g01880.t01 | Wine grape | cytosol | 29.25 | 26.38 |
VIT_07s0031g00700.t01 | Wine grape | cytosol | 33.33 | 24.26 |
VIT_01s0011g02470.t01 | Wine grape | cytosol | 25.85 | 23.46 |
VIT_17s0000g04460.t01 | Wine grape | cytosol | 25.17 | 23.12 |
Protein Annotations
Gene3D:1.10.238.10 | EntrezGene:100232874 | wikigene:100232874 | MapMan:35.1 | ProteinID:AAO49473 | ProteinID:AAO49473.1 |
EMBL:AF488697 | ProteinID:CBI22152 | ProteinID:CBI22152.3 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
EMBL:FN595238 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 | InterPro:IPR002048 |
EntrezGene:LOC100232874 | wikigene:LOC100232874 | RefSeq:NP_001268124.1 | PFAM:PF13405 | PFAM:PF13499 | ScanProsite:PS00018 |
PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF214 | UniProt:Q84U32 | SMART:SM00054 | SUPFAM:SSF47473 |
TIGR:TC54243 | UniParc:UPI000000368C | ArrayExpress:VIT_02s0241g00140 | EnsemblPlantsGene:VIT_02s0241g00140 | EnsemblPlants:VIT_02s0241g00140.t01 | unigene:Vvi.139 |
unigene:Vvi.25169 | : | : | : | : | : |
Description
Putative serine/threonine kinase [Source:UniProtKB/TrEMBL;Acc:Q84U32]
Coordinates
chr2:+:4762039..4762742
Molecular Weight (calculated)
16599.8 Da
IEP (calculated)
4.563
GRAVY (calculated)
-0.413
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDLSDDQV ASMKEAFTLF DTDGDGRIAP SELGILMRSL GGNPTQAKLK EIVAQENLTT PFDFPRFLDL MSKHMKPEPF DRQLRDAFKV LDKESTGFVS
101: VADLRHILTS IGEKLEPAEF DEWIREVDVG SDGKIRYEDF ISRMVAK
101: VADLRHILTS IGEKLEPAEF DEWIREVDVG SDGKIRYEDF ISRMVAK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.