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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_16s0100g00620.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12310.1 VIT_16s0100g00620.t01 AT5G62070.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH28027 Soybean cytosol, endoplasmic reticulum, nucleus 90.48 90.48
KRH77406 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 88.44 88.44
CDX98074 Canola cytosol 87.76 87.16
CDY30070 Canola cytosol 87.76 87.16
AT1G12310.1 Thale cress cytosol 87.76 87.16
Bra019756.1-P Field mustard cytosol 87.07 86.49
Bra026976.1-P Field mustard cytosol 87.07 86.49
CDY21044 Canola cytosol 87.07 86.49
CDY26556 Canola cytosol 87.07 86.49
CDY31259 Canola cytosol 87.07 86.49
CDY15991 Canola cytosol 86.39 85.81
PGSC0003DMT400070433 Potato cytosol 84.35 84.35
AT1G62820.1 Thale cress cytosol 83.67 83.11
Solyc03g083520.2.1 Tomato cytosol, nucleus 84.35 82.67
Solyc11g072270.1.1 Tomato cytosol 84.35 79.49
Os08t0117400-01 Rice plasma membrane 78.91 78.38
Zm00001d035095_P001 Maize cytosol, extracellular, mitochondrion 78.23 77.7
TraesCS7A01G316100.1 Wheat cytosol, unclear 78.23 77.7
OQU79799 Sorghum cytosol 77.55 77.03
GSMUA_Achr3P26750_001 Banana cytosol, plasma membrane 77.55 77.03
TraesCS7B01G217200.1 Wheat cytosol, plastid 77.55 77.03
TraesCS7D01G313100.1 Wheat cytosol 76.87 76.35
Zm00001d049665_P001 Maize cytosol, extracellular, mitochondrion, plasma membrane 76.19 75.68
KRH04023 Soybean cytosol 73.47 73.47
HORVU7Hr1G075240.1 Barley cytosol, plastid 78.91 59.49
VIT_08s0040g00470.t01 Wine grape cytosol 51.02 50.34
VIT_06s0009g01910.t01 Wine grape cytosol 51.02 49.02
VIT_17s0000g00580.t01 Wine grape cytosol 49.66 48.99
VIT_05s0020g04420.t01 Wine grape cytosol 40.14 39.6
VIT_14s0030g02150.t01 Wine grape cytosol 38.78 37.25
VIT_00s0179g00280.t01 Wine grape cytosol 34.69 34.23
VIT_02s0012g02060.t01 Wine grape cytosol 31.97 28.83
VIT_05s0094g01240.t01 Wine grape cytosol 29.93 26.67
VIT_16s0039g01880.t01 Wine grape cytosol 29.25 26.38
VIT_07s0031g00700.t01 Wine grape cytosol 33.33 24.26
VIT_01s0011g02470.t01 Wine grape cytosol 25.85 23.46
VIT_17s0000g04460.t01 Wine grape cytosol 25.17 23.12
Protein Annotations
Gene3D:1.10.238.10EntrezGene:100232874wikigene:100232874MapMan:35.1ProteinID:AAO49473ProteinID:AAO49473.1
EMBL:AF488697ProteinID:CBI22152ProteinID:CBI22152.3InterPro:EF-hand-dom_pairInterPro:EF_Hand_1_Ca_BSInterPro:EF_hand_dom
EMBL:FN595238GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005509GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016301GO:GO:0016310GO:GO:0016740InterPro:IPR002048
EntrezGene:LOC100232874wikigene:LOC100232874RefSeq:NP_001268124.1PFAM:PF13405PFAM:PF13499ScanProsite:PS00018
PFscan:PS50222PANTHER:PTHR23050PANTHER:PTHR23050:SF214UniProt:Q84U32SMART:SM00054SUPFAM:SSF47473
TIGR:TC54243UniParc:UPI000000368CArrayExpress:VIT_02s0241g00140EnsemblPlantsGene:VIT_02s0241g00140EnsemblPlants:VIT_02s0241g00140.t01unigene:Vvi.139
unigene:Vvi.25169:::::
Description
Putative serine/threonine kinase [Source:UniProtKB/TrEMBL;Acc:Q84U32]
Coordinates
chr2:+:4762039..4762742
Molecular Weight (calculated)
16599.8 Da
IEP (calculated)
4.563
GRAVY (calculated)
-0.413
Length
147 amino acids
Sequence
(BLAST)
001: MGKDLSDDQV ASMKEAFTLF DTDGDGRIAP SELGILMRSL GGNPTQAKLK EIVAQENLTT PFDFPRFLDL MSKHMKPEPF DRQLRDAFKV LDKESTGFVS
101: VADLRHILTS IGEKLEPAEF DEWIREVDVG SDGKIRYEDF ISRMVAK
Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.