Factsheet for VIT_02s0012g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g01880.t01	Wine grape	cytosol	84.66	84.66
KRH25249	Soybean	cytosol	82.21	82.21
Solyc03g097100.1.1	Tomato	cytosol	81.6	81.6
KRH30413	Soybean	cytosol	79.14	81.13
TraesCS1B01G208700.1	Wheat	cytosol	74.85	63.87
TraesCS1A01G193700.1	Wheat	cytosol	74.85	63.21
TraesCS1D01G197600.1	Wheat	cytosol	74.85	62.89
HORVU1Hr1G080000.3	Barley	cytosol	67.48	58.82
Os01t0505600-01	Rice	cytosol	75.46	58.29
OQU84270	Sorghum	cytosol, plastid	76.07	56.62
VIT_17s0000g04460.t01	Wine grape	cytosol	49.69	50.62
VIT_01s0011g02470.t01	Wine grape	cytosol	49.69	50.0
VIT_08s0040g00470.t01	Wine grape	cytosol	44.17	48.32
VIT_06s0009g01910.t01	Wine grape	cytosol	44.17	47.06
VIT_17s0000g00580.t01	Wine grape	cytosol	42.94	46.98
VIT_05s0020g04420.t01	Wine grape	cytosol	42.33	46.31
HORVU1Hr1G050720.2	Barley	cytosol	69.33	43.3
VIT_14s0030g02150.t01	Wine grape	cytosol	39.88	42.48
VIT_00s0179g00280.t01	Wine grape	cytosol	35.58	38.93
VIT_02s0241g00140.t01	Wine grape	cytosol	28.83	31.97
VIT_05s0094g01240.t01	Wine grape	cytosol	30.06	29.7
VIT_07s0031g00700.t01	Wine grape	cytosol	29.45	23.76

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100241974	wikigene:100241974	MapMan:35.1	EMBL:AM437631	ProteinID:CAN60669
ProteinID:CAN60669.1	ProteinID:CCB57861	ProteinID:CCB57861.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HT51	EMBL:FN596247	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048
EntrezGene:LOC100241974	wikigene:LOC100241974	PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR44256
PANTHER:PTHR44256:SF1	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00015C8B1B	ArrayExpress:VIT_02s0012g02060	EnsemblPlantsGene:VIT_02s0012g02060
EnsemblPlants:VIT_02s0012g02060.t01	RefSeq:XP_002276449	RefSeq:XP_002276449.1	RefSeq:XP_010663082.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:+:8764178..8764669

Molecular Weight (calculated)

18058.1 Da

IEP (calculated)

4.138

GRAVY (calculated)

-0.417

Length

163 amino acids

Sequence
(BLAST)

001: MSVDEPVKLD DEQIAELREI FRSFDRNNDG SLTQLELGSL LRSLGLKPTP EQLDALSQKA DKNSNGLIEF SEFVSLVAPD LLPAKSPYTE EQLRQLFRMF
101: DRDGNGYITA AELAHSMAKL GHALTAEELT GMIKEADTDG DGRINFEEFS QAITSAAFDN SWA

Best Arabidopsis Sequence Match ( AT3G03000.1 )
(BLAST)

001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG

Arabidopsis Description

CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.