CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89746
KRH03909
KRH05621
KRH15420
KRH16591
KRH39527
KRH43214
KRH45468
KRH45469
KRH52586
KRH57193
KRH59375
KRH61351
KRH61926
KRH74431
KRH75634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03000.1	KRH52586	AT1G22920.1	21798944
AT3G03000.1	KRH61926	AT1G22920.1	21798944
AT3G03000.1	KRH39527	AT2G22680.1	21798944
AT3G03000.1	KRH45468	AT2G22680.1	21798944
AT3G03000.1	KRH45469	AT2G22680.1	21798944
AT3G03000.1	KRH74431	AT2G22680.1	21798944
AT3G03000.1	KRH75634	AT2G22680.1	21798944
AT3G03000.1	KRH05621	AT3G50060.1	21798944
AT3G03000.1	KRH15420	AT3G50060.1	21798944
AT3G03000.1	KRH61351	AT3G50060.1	21798944
AT3G03000.1	KRH43214	AT5G10110.1	21798944
AT3G03000.1	KRH59375	AT5G10110.1	21798944
AT3G03000.1	KRG89746	AT5G63310.1	21798944
AT3G03000.1	KRH03909	AT5G63310.1	21798944
AT3G03000.1	KRH16591	AT5G63310.1	21798944
AT3G03000.1	KRH57193	AT5G63310.1	21798944
AT3G03000.1	KRH39527	AT5G65683.1	21798944
AT3G03000.1	KRH45468	AT5G65683.1	21798944
AT3G03000.1	KRH45469	AT5G65683.1	21798944
AT3G03000.1	KRH74431	AT5G65683.1	21798944
AT3G03000.1	KRH75634	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30413	Soybean	cytosol	90.8	93.08
PGSC0003DMT400038352	Potato	cytosol	83.44	83.44
VIT_02s0012g02060.t01	Wine grape	cytosol	82.21	82.21
Solyc03g097100.1.1	Tomato	cytosol	79.75	79.75
AT3G03000.1	Thale cress	cytosol	76.07	75.15
Bra021379.1-P	Field mustard	cytosol	73.01	70.41
CDY58544	Canola	cytosol	73.01	70.41
TraesCS1B01G208700.1	Wheat	cytosol	73.01	62.3
TraesCS1A01G193700.1	Wheat	cytosol	73.01	61.66
TraesCS1D01G197600.1	Wheat	cytosol	73.01	61.34
HORVU1Hr1G080000.3	Barley	cytosol	65.03	56.68
OQU84270	Sorghum	cytosol, plastid	76.07	56.62
Os01t0505600-01	Rice	cytosol	73.01	56.4
KRH56721	Soybean	cytosol	50.92	51.55
KRH62961	Soybean	cytosol	48.47	49.38
KRG94975	Soybean	nucleus	43.56	47.65
KRH07628	Soybean	cytosol	44.79	45.62
KRH31638	Soybean	cytosol	41.72	45.33
KRH54782	Soybean	cytosol	44.17	45.0
KRH34350	Soybean	cytosol	41.1	44.67
KRH69070	Soybean	cytosol	41.1	44.67
KRG92449	Soybean	cytosol	41.1	44.67
KRH18664	Soybean	cytosol	37.42	43.57
HORVU1Hr1G050720.2	Barley	cytosol	68.1	42.53
KRG96966	Soybean	cytosol	38.65	42.28
KRH68729	Soybean	cytosol	38.04	41.61
KRG95596	Soybean	cytosol	37.42	41.22
KRG92667	Soybean	cytosol	37.42	40.94
KRG94637	Soybean	cytosol	28.22	40.35
KRH34082	Soybean	cytosol	36.81	40.27
KRH67274	Soybean	cytosol	35.58	39.19
KRH32074	Soybean	cytosol	35.58	38.93
KRH71363	Soybean	cytosol	34.97	38.26
KRG89812	Soybean	cytosol, mitochondrion	36.2	35.76
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	29.45	32.65
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	28.83	31.97
KRH04023	Soybean	cytosol	27.61	30.61
KRH10567	Soybean	endoplasmic reticulum	25.15	24.12
KRH43884	Soybean	cytosol	19.02	23.66
KRG98826	Soybean	cytosol	19.63	20.38
KRG98823	Soybean	cytosol	18.4	19.11

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100820547	MapMan:35.1	EMBL:ACUP02007225	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_12G089800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	UniProt:I1LRH4
InterPro:IPR002048	EnsemblPlants:KRH25249	ProteinID:KRH25249	ProteinID:KRH25249.1	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00023D107F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:7377582..7378561

Molecular Weight (calculated)

18113.3 Da

IEP (calculated)

4.333

GRAVY (calculated)

-0.340

Length

163 amino acids

Sequence
(BLAST)

001: MSKKQTVKLD EEQIAELREI FRSFDRNNDG SLTQLELSSL LRSLGLKPSA DQLEGFIQRA DTNSNGLVEF SEFVALVAPE LLPAKSPYTE EQLKQLFRMF
101: DRDGNGLITA AELAHSMARL GHALTAEELT GMIKEADTDG DGMINYQEFA HAITSAAFDN CWP

Best Arabidopsis Sequence Match ( AT1G32250.1 )
(BLAST)

001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGVKPSP DQFETLIDKA DTKSNGLVEF PEFVALVSPE LLSPAKRTTP YTEEQLLRLF
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG

Arabidopsis Description

CML17Probable calcium-binding protein CML17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.