CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92986
KRH11322
KRH20952
KRH36229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50360.1	KRG92986	AT2G39340.1	19843313
AT3G50360.1	KRH36229	AT2G39340.1	19843313
AT3G50360.1	KRH11322	AT3G06290.1	19843313
AT3G50360.1	KRH20952	AT3G06290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98823	Soybean	cytosol	92.36	92.36
KRH43884	Soybean	cytosol	64.97	77.86
KRH10567	Soybean	endoplasmic reticulum	81.53	75.29
AT3G50360.1	Thale cress	cytosol	68.15	63.31
TraesCS2D01G173900.1	Wheat	cytosol, mitochondrion	64.97	60.71
TraesCS2B01G192400.1	Wheat	cytosol, mitochondrion	64.97	60.71
TraesCS2A01G166500.1	Wheat	cytosol, mitochondrion	64.97	60.71
HORVU2Hr1G030640.1	Barley	cytosol	64.97	60.35
VIT_05s0094g01240.t01	Wine grape	cytosol	63.06	60.0
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	63.06	58.93
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	63.06	58.93
Solyc04g026350.2.1	Tomato	cytosol	64.33	58.38
Zm00001d022160_P003	Maize	cytosol, mitochondrion	63.06	57.56
CDX83123	Canola	golgi	67.52	55.5
KXG36700	Sorghum	cytosol	60.51	55.23
CDY62753	Canola	cytosol	67.52	53.0
GSMUA_Achr6P10140_001	Banana	cytosol	53.5	51.53
Os07t0618800-01	Rice	plasma membrane	66.24	49.76
CDX75623	Canola	extracellular	56.69	49.44
VIT_07s0031g00700.t01	Wine grape	cytosol	63.06	49.01
AT4G37010.2	Thale cress	cytosol, mitochondrion	52.87	48.54
TraesCS7B01G412100.1	Wheat	cytosol	54.14	46.96
HORVU7Hr1G113200.1	Barley	cytosol	52.87	45.86
Zm00001d014271_P001	Maize	cytosol	51.59	45.25
Os10t0389000-01	Rice	plasma membrane	52.87	43.46
KRG94975	Soybean	nucleus	33.12	34.9
KRH68729	Soybean	cytosol	31.85	33.56
KRH31638	Soybean	cytosol	31.85	33.33
KRH69070	Soybean	cytosol	31.85	33.33
KRG95596	Soybean	cytosol	31.21	33.11
KRH67274	Soybean	cytosol	31.21	33.11
KRG96966	Soybean	cytosol	31.21	32.89
KRH34350	Soybean	cytosol	31.21	32.67
KRG92449	Soybean	cytosol	30.57	32.0
KRH18664	Soybean	cytosol	26.75	30.0
KRH34082	Soybean	cytosol	28.03	29.53
KRG92667	Soybean	cytosol	27.39	28.86
KRG89812	Soybean	cytosol, mitochondrion	29.94	28.48
KRH71363	Soybean	cytosol	26.75	28.19
KRG94637	Soybean	cytosol	19.75	27.19
KRH32074	Soybean	cytosol	25.48	26.85
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	22.29	23.81
KRH56721	Soybean	cytosol	24.2	23.6
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	21.66	23.13
KRH62961	Soybean	cytosol	23.57	23.12
KRH07628	Soybean	cytosol	22.93	22.5
KRH54782	Soybean	cytosol	22.93	22.5
KRH04023	Soybean	cytosol	21.02	22.45
KRH30413	Soybean	cytosol	20.38	20.13
KRH25249	Soybean	cytosol	20.38	19.63

Protein Annotations

Gene3D:1.10.238.10	MapMan:14.6.1.1	MapMan:16.11.2.3	EMBL:ACUP02010923	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_18G101100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	UniProt:I1N0S3
InterPro:IPR002048	EnsemblPlants:KRG98826	ProteinID:KRG98826	ProteinID:KRG98826.1	PFAM:PF13499	PFAM:PF13833
ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF167	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000296116D	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:10687009..10689948

Molecular Weight (calculated)

17808.8 Da

IEP (calculated)

4.357

GRAVY (calculated)

-0.746

Length

157 amino acids

Sequence
(BLAST)

001: MSSLYRGESK SYNNIPRGHH NLTTQKKQEI REAFELFNTD GSGTIDAKEL NVAMRALGFE MTEEHINQMI ADLDKDGSGA IDYEEFEYMM TTKIGERDSK
101: EGKISASDIK CIAKEPGQNF TNREIPELVD EADQDNCPVV SAEEFIRMLL DTPYYGH

Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)

001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN

Arabidopsis Description

CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.