Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G113200.1 | Barley | cytosol | 83.24 | 82.32 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 82.68 | 81.77 |
| Os10t0389000-01 | Rice | plasma membrane | 79.89 | 74.87 |
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 62.01 | 67.27 |
| AT3G50360.1 | Thale cress | cytosol | 61.45 | 65.09 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 60.89 | 64.88 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 60.89 | 64.88 |
| Solyc04g026350.2.1 | Tomato | cytosol | 62.01 | 64.16 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 58.1 | 63.8 |
| Zm00001d022160_P003 | Maize | cytosol, mitochondrion | 60.89 | 63.37 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 59.22 | 61.99 |
| KRH10567 | Soybean | endoplasmic reticulum | 58.66 | 61.76 |
| CDX75623 | Canola | extracellular | 62.01 | 61.67 |
| CDX83123 | Canola | golgi | 60.34 | 56.54 |
| KRH43884 | Soybean | cytosol | 41.34 | 56.49 |
| CDY62753 | Canola | cytosol | 61.45 | 55.0 |
| VIT_07s0031g00700.t01 | Wine grape | cytosol | 62.01 | 54.95 |
| KRG98826 | Soybean | cytosol | 45.25 | 51.59 |
| KRG98823 | Soybean | cytosol | 44.13 | 50.32 |
| Zm00001d008278_P001 | Maize | cytosol | 32.4 | 45.67 |
| Zm00001d038545_P001 | Maize | cytosol, mitochondrion | 35.2 | 42.28 |
| Zm00001d047597_P001 | Maize | cytosol | 32.96 | 40.14 |
| Zm00001d043144_P001 | Maize | plasma membrane | 37.43 | 36.61 |
| Zm00001d005003_P002 | Maize | cytosol | 36.31 | 36.11 |
| Zm00001d038543_P004 | Maize | plastid | 34.08 | 36.09 |
| Zm00001d041430_P001 | Maize | cytosol | 34.08 | 36.09 |
| Zm00001d052415_P001 | Maize | cytosol | 31.84 | 36.08 |
| Zm00001d028948_P001 | Maize | cytosol | 37.43 | 34.01 |
| Zm00001d053188_P001 | Maize | cytosol | 18.99 | 31.19 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 25.14 | 30.41 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 25.14 | 30.41 |
| Zm00001d033980_P001 | Maize | cytosol | 25.7 | 29.3 |
| Zm00001d039110_P001 | Maize | cytosol | 27.37 | 28.49 |
| Zm00001d010649_P001 | Maize | extracellular | 18.99 | 23.94 |
| Zm00001d044411_P001 | Maize | plastid | 30.73 | 23.5 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:14.6.1.1 | MapMan:16.11.2.3 | UniProt:A0A1D6GRJ1 | ProteinID:AQK65723.1 | InterPro:EF-hand-dom_pair |
| InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 |
| PFAM:PF13499 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF167 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI00022133D8 | EnsemblPlantsGene:Zm00001d014271 | EnsemblPlants:Zm00001d014271_P001 | EnsemblPlants:Zm00001d014271_T001 | SEG:seg |
Description
Caltractin
Coordinates
chr5:+:38630685..38632757
Molecular Weight (calculated)
20325.9 Da
IEP (calculated)
4.302
GRAVY (calculated)
-0.747
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGTYEASDR PPPPNSAGYR TDKVRRKRLT AQKRKEIKEA FDLFDIDGSG TIDARELNVA MRALGFEMTP EQIGQMIAEV DKDGSGTIDF DEFVHMMTDK
101: MGERDARDEL HKAFRIIDQD ANGKISDMDI QRLAIETGEH FTLDEVREMI EAADEDGDGE IDLEEFMKMM KRTDFGSGF
101: MGERDARDEL HKAFRIIDQD ANGKISDMDI QRLAIETGEH FTLDEVREMI EAADEDGDGE IDLEEFMKMM KRTDFGSGF
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.