Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0836400-02 | |
| Os05t0462600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G50360.1 | Os01t0836400-02 | AT2G39340.1 | 19843313 |
| AT3G50360.1 | Os05t0462600-01 | AT2G39340.1 | 19843313 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G113200.1 | Barley | cytosol | 78.01 | 82.32 |
| Zm00001d014271_P001 | Maize | cytosol | 74.87 | 79.89 |
| TraesCS7B01G412100.1 | Wheat | cytosol | 74.87 | 79.01 |
| VIT_05s0094g01240.t01 | Wine grape | cytosol | 58.12 | 67.27 |
| AT3G50360.1 | Thale cress | cytosol | 58.64 | 66.27 |
| GSMUA_Achr6P10140_001 | Banana | cytosol | 56.54 | 66.26 |
| Solyc02g090810.2.1 | Tomato | cytosol, mitochondrion | 57.59 | 65.48 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 57.59 | 65.48 |
| Solyc04g026350.2.1 | Tomato | cytosol | 59.16 | 65.32 |
| KRH10567 | Soybean | endoplasmic reticulum | 56.54 | 63.53 |
| AT4G37010.2 | Thale cress | cytosol, mitochondrion | 53.4 | 59.65 |
| CDX75623 | Canola | extracellular | 56.02 | 59.44 |
| KRH43884 | Soybean | cytosol | 40.31 | 58.78 |
| CDX83123 | Canola | golgi | 58.64 | 58.64 |
| CDY62753 | Canola | cytosol | 59.69 | 57.0 |
| Os07t0618800-01 | Rice | plasma membrane | 59.16 | 54.07 |
| KRG98823 | Soybean | cytosol | 43.98 | 53.5 |
| VIT_07s0031g00700.t01 | Wine grape | cytosol | 56.54 | 53.47 |
| KRG98826 | Soybean | cytosol | 43.46 | 52.87 |
| Os07t0687200-02 | Rice | cytosol | 37.7 | 48.32 |
| Os01t0267900-01 | Rice | cytosol | 37.7 | 48.32 |
| Os05t0491100-01 | Rice | cytosol, extracellular | 37.7 | 48.32 |
| Os03t0319300-01 | Rice | cytosol, extracellular, nucleus | 37.7 | 48.32 |
| Os01t0279300-01 | Rice | cytosol, plasma membrane, plastid | 37.17 | 47.65 |
| Os11t0586200-00 | Rice | cytosol | 32.98 | 41.72 |
| Os03t0743500-02 | Rice | nucleus | 32.46 | 40.26 |
| Os12t0603800-00 | Rice | cytosol | 34.03 | 39.16 |
| Os01t0810300-01 | Rice | plasma membrane | 34.55 | 35.29 |
| Os08t0117400-01 | Rice | plasma membrane | 24.08 | 31.08 |
| Os05t0491000-01 | Rice | cytosol | 25.13 | 30.97 |
| Os05t0577500-01 | Rice | cytosol, mitochondrion | 25.13 | 27.75 |
| Os01t0604500-01 | Rice | cytosol | 29.32 | 22.49 |
| Os01t0505600-01 | Rice | cytosol | 20.94 | 18.96 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:14.6.1.1 | MapMan:16.11.2.3 | EntrezGene:4348517 | ProteinID:ABB47484.1 | EMBL:AK065782 |
| ProteinID:BAF26412.2 | ProteinID:BAT10651.1 | InterPro:Calflagin-bd | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0046872 | InterPro:IPR002048 | EnsemblPlantsGene:Os10g0389000 | EnsemblPlants:Os10t0389000-01 | PFAM:PF13499 | PRINTS:PR01362 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR23050 | PANTHER:PTHR23050:SF167 | UniProt:Q338P8 | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI00005E1E10 | RefSeq:XP_015612802.1 | SEG:seg | : | : |
Description
CALMODULIN-LIKE PROTEIN 8Centrin. (Os10t0389000-01)
Coordinates
chr10:-:12870906..12874037
Molecular Weight (calculated)
21316.0 Da
IEP (calculated)
4.563
GRAVY (calculated)
-0.770
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKYRGYYH DEASSAAGGG GGGGGGDGYR REKQVRKKRL TAQKRKEIKE AFDLFDTDGS GTIDPKELNV AMRALGFEMT PEQIHQMIAE VDKDGSGTID
101: FDEFVHMMTD KMGERDAREE LNKAFKIIDK DNNGKISDVD IQRLAIETGE PFTLDEVREM IEAADENGDG EVDHEEFLKM MKRIGFGAGF F
101: FDEFVHMMTD KMGERDAREE LNKAFKIIDK DNNGKISDVD IQRLAIETGE PFTLDEVREM IEAADENGDG EVDHEEFLKM MKRIGFGAGF F
001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN
Arabidopsis Description
CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.