CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92986
KRH11322
KRH20952
KRH36229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50360.1	KRG92986	AT2G39340.1	19843313
AT3G50360.1	KRH36229	AT2G39340.1	19843313
AT3G50360.1	KRH11322	AT3G06290.1	19843313
AT3G50360.1	KRH20952	AT3G06290.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98826	Soybean	cytosol	92.36	92.36
KRH43884	Soybean	cytosol	64.33	77.1
KRH10567	Soybean	endoplasmic reticulum	80.25	74.12
AT3G50360.1	Thale cress	cytosol	66.24	61.54
TraesCS2D01G173900.1	Wheat	cytosol, mitochondrion	64.97	60.71
TraesCS2B01G192400.1	Wheat	cytosol, mitochondrion	64.97	60.71
TraesCS2A01G166500.1	Wheat	cytosol, mitochondrion	64.97	60.71
HORVU2Hr1G030640.1	Barley	cytosol	64.97	60.35
VIT_05s0094g01240.t01	Wine grape	cytosol	63.06	60.0
Solyc04g026350.2.1	Tomato	cytosol	63.69	57.8
Solyc02g090810.2.1	Tomato	cytosol, mitochondrion	61.78	57.74
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	61.78	57.74
Zm00001d022160_P003	Maize	cytosol, mitochondrion	63.06	57.56
KXG36700	Sorghum	cytosol	60.51	55.23
CDX83123	Canola	golgi	65.61	53.93
GSMUA_Achr6P10140_001	Banana	cytosol	53.5	51.53
CDY62753	Canola	cytosol	65.61	51.5
Os07t0618800-01	Rice	plasma membrane	66.24	49.76
AT4G37010.2	Thale cress	cytosol, mitochondrion	54.14	49.71
CDX75623	Canola	extracellular	56.69	49.44
VIT_07s0031g00700.t01	Wine grape	cytosol	62.42	48.51
TraesCS7B01G412100.1	Wheat	cytosol	52.87	45.86
HORVU7Hr1G113200.1	Barley	cytosol	51.59	44.75
Zm00001d014271_P001	Maize	cytosol	50.32	44.13
Os10t0389000-01	Rice	plasma membrane	53.5	43.98
KRG94975	Soybean	nucleus	31.85	33.56
KRH68729	Soybean	cytosol	30.57	32.21
KRH31638	Soybean	cytosol	30.57	32.0
KRH69070	Soybean	cytosol	30.57	32.0
KRH67274	Soybean	cytosol	29.94	31.76
KRG95596	Soybean	cytosol	29.94	31.76
KRG96966	Soybean	cytosol	29.94	31.54
KRH34350	Soybean	cytosol	29.94	31.33
KRG92449	Soybean	cytosol	29.3	30.67
KRH34082	Soybean	cytosol	27.39	28.86
KRH18664	Soybean	cytosol	25.48	28.57
KRG92667	Soybean	cytosol	26.75	28.19
KRG89812	Soybean	cytosol, mitochondrion	28.66	27.27
KRH71363	Soybean	cytosol	25.48	26.85
KRG94637	Soybean	cytosol	19.11	26.32
KRH32074	Soybean	cytosol	24.2	25.5
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	21.02	22.45
KRH56721	Soybean	cytosol	22.93	22.36
KRH62961	Soybean	cytosol	22.29	21.88
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	20.38	21.77
KRH54782	Soybean	cytosol	21.66	21.25
KRH07628	Soybean	cytosol	21.66	21.25
KRH04023	Soybean	cytosol	19.75	21.09
KRH30413	Soybean	cytosol	19.11	18.87
KRH25249	Soybean	cytosol	19.11	18.4

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100817836	MapMan:14.6.1.1	MapMan:16.11.2.3	EMBL:ACUP02010923	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_18G100800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:IPR002048	UniProt:K7MR09	EnsemblPlants:KRG98823	ProteinID:KRG98823	ProteinID:KRG98823.1	PFAM:PF13499
PFAM:PF13833	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR23050	PANTHER:PTHR23050:SF167	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI00029670DE	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:10648664..10651620

Molecular Weight (calculated)

17873.8 Da

IEP (calculated)

4.367

GRAVY (calculated)

-0.836

Length

157 amino acids

Sequence
(BLAST)

001: MSSLYGGESK RYNNIPRGHH HLTTQKKQEI REAFELFNTD GSGTIDAKDL NVAMRALGFE MTEELINQMK ADLDKDGSGA IDYEEFEYMM TTKIGERDSK
101: EGKISASDIK CIAKEPGQNF TNRDIQEMVD EADQDNCPEV SAEEFIRMLF DPPYYGH

Best Arabidopsis Sequence Match ( AT3G50360.1 )
(BLAST)

001: MSSIYRTVSR KEKPRRHHGL TTQKKQEIKE AFELFDTDGS GTIDAKELNV AMRALGFEMT EEQINKMIAD VDKDGSGAID FDEFVHMMTA KIGERDTKEE
101: LTKAFQIIDL DKNGKISPDD IKRMAKDLGE NFTDAEIREM VEEADRDRDG EVNMDEFMRM MRRTAYGGN

Arabidopsis Description

CML20Probable calcium-binding protein CML20 [Source:UniProtKB/Swiss-Prot;Acc:O82659]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.