Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- cytosol 3
- plasma membrane 1
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G12310.1 | KRG91452 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | KRH09113 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | KRH35361 | AT5G62070.1 | 21798944 |
| AT1G12310.1 | KRH38565 | AT5G62070.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77406 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 76.87 | 76.87 |
| KRH28027 | Soybean | cytosol, endoplasmic reticulum, nucleus | 75.51 | 75.51 |
| Bra026976.1-P | Field mustard | cytosol | 74.15 | 73.65 |
| CDY21044 | Canola | cytosol | 74.15 | 73.65 |
| CDY26556 | Canola | cytosol | 74.15 | 73.65 |
| VIT_02s0241g00140.t01 | Wine grape | cytosol | 73.47 | 73.47 |
| AT1G12310.1 | Thale cress | cytosol | 73.47 | 72.97 |
| CDX98074 | Canola | cytosol | 73.47 | 72.97 |
| CDY15991 | Canola | cytosol | 73.47 | 72.97 |
| CDY30070 | Canola | cytosol | 73.47 | 72.97 |
| CDY31259 | Canola | cytosol | 73.47 | 72.97 |
| Bra019756.1-P | Field mustard | cytosol | 72.11 | 71.62 |
| AT1G62820.1 | Thale cress | cytosol | 71.43 | 70.95 |
| PGSC0003DMT400070433 | Potato | cytosol | 70.75 | 70.75 |
| Solyc03g083520.2.1 | Tomato | cytosol, nucleus | 72.11 | 70.67 |
| Solyc11g072270.1.1 | Tomato | cytosol | 70.07 | 66.03 |
| Os08t0117400-01 | Rice | plasma membrane | 65.31 | 64.86 |
| TraesCS7B01G217200.1 | Wheat | cytosol, plastid | 64.63 | 64.19 |
| GSMUA_Achr3P26750_001 | Banana | cytosol, plasma membrane | 63.95 | 63.51 |
| TraesCS7D01G313100.1 | Wheat | cytosol | 63.95 | 63.51 |
| TraesCS7A01G316100.1 | Wheat | cytosol, unclear | 63.95 | 63.51 |
| Zm00001d035095_P001 | Maize | cytosol, extracellular, mitochondrion | 63.27 | 62.84 |
| OQU79799 | Sorghum | cytosol | 62.59 | 62.16 |
| Zm00001d049665_P001 | Maize | cytosol, extracellular, mitochondrion, plasma membrane | 61.9 | 61.49 |
| HORVU7Hr1G075240.1 | Barley | cytosol, plastid | 65.31 | 49.23 |
| KRG94975 | Soybean | nucleus | 45.58 | 44.97 |
| KRG92449 | Soybean | cytosol | 40.82 | 40.0 |
| KRH69070 | Soybean | cytosol | 40.82 | 40.0 |
| KRH34350 | Soybean | cytosol | 40.82 | 40.0 |
| KRH18664 | Soybean | cytosol | 38.1 | 40.0 |
| KRH31638 | Soybean | cytosol | 40.14 | 39.33 |
| KRG96966 | Soybean | cytosol | 37.41 | 36.91 |
| KRG95596 | Soybean | cytosol | 36.73 | 36.49 |
| KRH68729 | Soybean | cytosol | 36.73 | 36.24 |
| KRH67274 | Soybean | cytosol | 36.05 | 35.81 |
| KRG92667 | Soybean | cytosol | 35.37 | 34.9 |
| KRH34082 | Soybean | cytosol | 35.37 | 34.9 |
| KRG89812 | Soybean | cytosol, mitochondrion | 38.78 | 34.55 |
| KRH71363 | Soybean | cytosol | 33.33 | 32.89 |
| KRH32074 | Soybean | cytosol | 33.33 | 32.89 |
| KRG94637 | Soybean | cytosol | 25.17 | 32.46 |
| KRH30413 | Soybean | cytosol | 29.93 | 27.67 |
| KRH25249 | Soybean | cytosol | 30.61 | 27.61 |
| KRH43884 | Soybean | cytosol | 23.81 | 26.72 |
| KRH56721 | Soybean | cytosol | 29.25 | 26.71 |
| KRH10567 | Soybean | endoplasmic reticulum | 29.25 | 25.29 |
| KRH62961 | Soybean | cytosol | 26.53 | 24.38 |
| KRH54782 | Soybean | cytosol | 24.49 | 22.5 |
| KRH07628 | Soybean | cytosol | 23.13 | 21.25 |
| KRG98826 | Soybean | cytosol | 22.45 | 21.02 |
| KRG98823 | Soybean | cytosol | 21.09 | 19.75 |
Protein Annotations
| EMBL:ACUP02010374 | EnsemblPlants:KRH04023 | EnsemblPlantsGene:GLYMA_17G134900 | EntrezGene:100783620 | Gene3D:1.10.238.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR23050 |
| PANTHER:PTHR23050:SF214 | PFAM:PF13405 | PFAM:PF13499 | PFscan:PS50222 | ProteinID:KRH04023 | ProteinID:KRH04023.1 |
| SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000233F0C1 | UniProt:I1MUU3 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr17:-:10857033..10857476
Molecular Weight (calculated)
16559.8 Da
IEP (calculated)
5.933
GRAVY (calculated)
-0.414
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTNLSEQQV SAMKEAFTLF DTHRNGRIAP SELGILMRSL GGNPTQTQLK AIMAEENLTE PFDFSRFLDL MGKHLKVEPF DGPLHDAFKV HDKESTGHVS
101: VTTLRHILTN IGEKLEPSEF DEWIKEANVV SDGKINYGEF IAKMIRK
101: VTTLRHILTN IGEKLEPSEF DEWIKEANVV SDGKINYGEF IAKMIRK
001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK
Arabidopsis Description
CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.