Factsheet for PGSC0003DMT400070433

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037043

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12310.1	PGSC0003DMT400037043	AT5G62070.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g072270.1.1	Tomato	cytosol	98.64	92.95
AT1G12310.1	Thale cress	cytosol	87.76	87.16
CDX98074	Canola	cytosol	87.07	86.49
CDY21044	Canola	cytosol	87.07	86.49
CDY30070	Canola	cytosol	87.07	86.49
CDY31259	Canola	cytosol	87.07	86.49
KRH77406	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	85.71	85.71
Bra019756.1-P	Field mustard	cytosol	85.71	85.14
AT1G62820.1	Thale cress	cytosol	85.71	85.14
KRH28027	Soybean	cytosol, endoplasmic reticulum, nucleus	85.03	85.03
Bra026976.1-P	Field mustard	cytosol	85.03	84.46
CDY26556	Canola	cytosol	85.03	84.46
VIT_02s0241g00140.t01	Wine grape	cytosol	84.35	84.35
CDY15991	Canola	cytosol	84.35	83.78
OQU79799	Sorghum	cytosol	77.55	77.03
Zm00001d035095_P001	Maize	cytosol, extracellular, mitochondrion	76.19	75.68
TraesCS7D01G313100.1	Wheat	cytosol	75.51	75.0
Zm00001d049665_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	74.83	74.32
TraesCS7B01G217200.1	Wheat	cytosol, plastid	74.83	74.32
TraesCS7A01G316100.1	Wheat	cytosol, unclear	74.83	74.32
Os08t0117400-01	Rice	plasma membrane	74.15	73.65
GSMUA_Achr3P26750_001	Banana	cytosol, plasma membrane	72.79	72.3
KRH04023	Soybean	cytosol	70.75	70.75
HORVU7Hr1G075240.1	Barley	cytosol, plastid	74.15	55.9
PGSC0003DMT400070437	Potato	cytosol	48.3	47.65
PGSC0003DMT400018569	Potato	cytosol	48.3	47.65
PGSC0003DMT400058435	Potato	cytosol	48.3	47.65
PGSC0003DMT400083971	Potato	extracellular	46.94	46.31
PGSC0003DMT400054299	Potato	cytosol	33.33	43.36
PGSC0003DMT400042062	Potato	cytosol	42.86	42.0
PGSC0003DMT400046278	Potato	cytosol	21.77	41.56
PGSC0003DMT400014123	Potato	mitochondrion	30.61	36.89
PGSC0003DMT400083727	Potato	cytosol	35.37	35.37
PGSC0003DMT400034833	Potato	cytosol	36.73	35.29
PGSC0003DMT400097662	Potato	cytosol, mitochondrion	39.46	33.53
PGSC0003DMT400008152	Potato	cytosol	34.01	30.67
PGSC0003DMT400038352	Potato	cytosol	33.33	30.06
PGSC0003DMT400010295	Potato	cytosol, mitochondrion	33.33	29.17
PGSC0003DMT400019291	Potato	cytosol	21.77	27.59
PGSC0003DMT400063261	Potato	cytosol	27.89	25.47
PGSC0003DMT400041342	Potato	cytosol, mitochondrion	27.89	25.47

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102595378	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CM59	PFAM:PF13405
PFAM:PF13499	EnsemblPlantsGene:PGSC0003DMG400027382	PGSC:PGSC0003DMG400027382	EnsemblPlants:PGSC0003DMT400070433	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR23050	PANTHER:PTHR23050:SF214	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000295FF0A	RefSeq:XP_006340368.1

Description

EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027382]

Coordinates

chr11:-:43842097..43845851

Molecular Weight (calculated)

16546.7 Da

IEP (calculated)

4.645

GRAVY (calculated)

-0.444

Length

147 amino acids

Sequence
(BLAST)

001: MGKDLSNDQI SSMKEAFTLF DTDGDGKISP SELGILMRSL GGNPTQAQLK SIIAEEKLTS PFDFNRFLEL MSKHLKPEPF DRQLRDAFKV LDKDGTGYVV
101: VSDLKHILTS IGEKLEPSEF DEWIREVDAG SDGKIRYEDF IARMVAK

Best Arabidopsis Sequence Match ( AT1G12310.1 )
(BLAST)

001: MGKDGLSDDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTQAQL KSIIASENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLEPNE FDEWIKEVDV GSDGKIRYED FIARMVAK

Arabidopsis Description

CML13Probable calcium-binding protein CML13 [Source:UniProtKB/Swiss-Prot;Acc:Q94AZ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.