Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- vacuole 1
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g097100.1.1 | Tomato | cytosol | 98.77 | 98.77 |
| PGSC0003DMT400038352 | Potato | cytosol | 80.37 | 80.37 |
| PGSC0003DMT400063261 | Potato | cytosol | 52.76 | 53.42 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 51.53 | 52.17 |
| PGSC0003DMT400046278 | Potato | cytosol | 23.93 | 50.65 |
| PGSC0003DMT400018569 | Potato | cytosol | 45.4 | 49.66 |
| PGSC0003DMT400070437 | Potato | cytosol | 45.4 | 49.66 |
| PGSC0003DMT400058435 | Potato | cytosol | 44.79 | 48.99 |
| PGSC0003DMT400042062 | Potato | cytosol | 44.17 | 48.0 |
| PGSC0003DMT400083971 | Potato | extracellular | 43.56 | 47.65 |
| PGSC0003DMT400019291 | Potato | cytosol | 33.74 | 47.41 |
| PGSC0003DMT400054299 | Potato | cytosol | 32.52 | 46.9 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 31.9 | 42.62 |
| PGSC0003DMT400083727 | Potato | cytosol | 37.42 | 41.5 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 41.1 | 38.73 |
| PGSC0003DMT400034833 | Potato | cytosol | 36.2 | 38.56 |
| PGSC0003DMT400070433 | Potato | cytosol | 30.67 | 34.01 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 30.67 | 29.76 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:102583396 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:M0ZU61 | PFAM:PF13499 |
| EnsemblPlantsGene:PGSC0003DMG400003146 | PGSC:PGSC0003DMG400003146 | EnsemblPlants:PGSC0003DMT400008152 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44256 |
| PANTHER:PTHR44256:SF1 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000296D8C1 | RefSeq:XP_006347583.1 | SEG:seg |
Description
Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400003146]
Coordinates
chr3:-:46697881..46699969
Molecular Weight (calculated)
18021.1 Da
IEP (calculated)
4.159
GRAVY (calculated)
-0.387
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGDAEPKLD DDQIAELREI FRSFDRNNDG SLTQLELGSL LRSLGLKPSN DQLEDLIQKA DRNSNGLIEF SEFVALVAPE LIAAKCPYSE EQLKKIFRMF
101: DRDGNGVITA AELAHSMAKL GHALTQEELT GMIKEADRDG DGCISFEEFA QAMTSAAFDN SWT
101: DRDGNGVITA AELAHSMAKL GHALTQEELT GMIKEADRDG DGCISFEEFA QAMTSAAFDN SWT
001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG
Arabidopsis Description
CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.