Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- vacuole 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH25249 | Soybean | cytosol | 83.44 | 83.44 |
| VIT_16s0039g01880.t01 | Wine grape | cytosol | 80.37 | 80.37 |
| PGSC0003DMT400008152 | Potato | cytosol | 80.37 | 80.37 |
| AT3G03000.1 | Thale cress | cytosol | 79.14 | 78.18 |
| KRH30413 | Soybean | cytosol | 76.07 | 77.99 |
| Bra021379.1-P | Field mustard | cytosol | 78.53 | 75.74 |
| CDY58544 | Canola | cytosol | 78.53 | 75.74 |
| TraesCS1B01G208700.1 | Wheat | cytosol | 73.62 | 62.83 |
| TraesCS1A01G193700.1 | Wheat | cytosol | 73.62 | 62.18 |
| TraesCS1D01G197600.1 | Wheat | cytosol | 73.62 | 61.86 |
| HORVU1Hr1G080000.3 | Barley | cytosol | 65.64 | 57.22 |
| Os01t0505600-01 | Rice | cytosol | 73.62 | 56.87 |
| OQU84270 | Sorghum | cytosol, plastid | 73.62 | 54.79 |
| PGSC0003DMT400041342 | Potato | cytosol, mitochondrion | 50.92 | 51.55 |
| PGSC0003DMT400063261 | Potato | cytosol | 50.31 | 50.93 |
| PGSC0003DMT400046278 | Potato | cytosol | 23.93 | 50.65 |
| PGSC0003DMT400019291 | Potato | cytosol | 33.74 | 47.41 |
| PGSC0003DMT400083971 | Potato | extracellular | 42.94 | 46.98 |
| PGSC0003DMT400070437 | Potato | cytosol | 42.33 | 46.31 |
| PGSC0003DMT400018569 | Potato | cytosol | 42.33 | 46.31 |
| PGSC0003DMT400058435 | Potato | cytosol | 41.72 | 45.64 |
| PGSC0003DMT400042062 | Potato | cytosol | 41.72 | 45.33 |
| PGSC0003DMT400054299 | Potato | cytosol | 31.29 | 45.13 |
| HORVU1Hr1G050720.2 | Barley | cytosol | 66.87 | 41.76 |
| PGSC0003DMT400014123 | Potato | mitochondrion | 30.67 | 40.98 |
| PGSC0003DMT400083727 | Potato | cytosol | 35.58 | 39.46 |
| PGSC0003DMT400034833 | Potato | cytosol | 36.81 | 39.22 |
| PGSC0003DMT400097662 | Potato | cytosol, mitochondrion | 39.88 | 37.57 |
| PGSC0003DMT400070433 | Potato | cytosol | 30.06 | 33.33 |
| PGSC0003DMT400010295 | Potato | cytosol, mitochondrion | 28.83 | 27.98 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:102582093 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0000325 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0043269 |
| InterPro:IPR002048 | UniProt:M1B6P8 | PFAM:PF13499 | EnsemblPlantsGene:PGSC0003DMG400014797 | PGSC:PGSC0003DMG400014797 | EnsemblPlants:PGSC0003DMT400038352 |
| ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR44256 | PANTHER:PTHR44256:SF1 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI000295AE29 | RefSeq:XP_006352896.1 | RefSeq:XP_015166598.1 | SEG:seg | : | : |
Description
Calmodulin [Source:PGSC_GENE;Acc:PGSC0003DMG400014797]
Coordinates
chr8:+:49136579..49138677
Molecular Weight (calculated)
18043.1 Da
IEP (calculated)
4.232
GRAVY (calculated)
-0.429
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNKAPVKLD DEQLAELREI FRSFDRNDDG SLTQLELGAL LRSLGLKPSP DQLETLIQKA DKNDNGLVEF SEFVSLVAPE LLPAKSPYTE EQLKQLFKMF
101: DRDGNGYITA AELAHSMAKL GHALTAEELT GMIREADTDG DGRISYQEFT QAISSAAFDN SWA
101: DRDGNGYITA AELAHSMAKL GHALTAEELT GMIREADTDG DGRISYQEFT QAISSAAFDN SWA
001: MSHKVSKKLD EEQINELREI FRSFDRNKDG SLTQLELGSL LRALGVKPSP DQFETLIDKA DTKSNGLVEF PEFVALVSPE LLSPAKRTTP YTEEQLLRLF
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG
101: RIFDTDGNGF ITAAELAHSM AKLGHALTVA ELTGMIKEAD SDGDGRINFQ EFAKAINSAA FDDIWG
Arabidopsis Description
CML17Probable calcium-binding protein CML17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQN4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.