Factsheet for PGSC0003DMT400039453

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007475
PGSC0003DMT400015465
PGSC0003DMT400023048
PGSC0003DMT400028840
PGSC0003DMT400039453
PGSC0003DMT400047487
PGSC0003DMT400056629
PGSC0003DMT400060448
PGSC0003DMT400069352
PGSC0003DMT400077272

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63310.1	PGSC0003DMT400023048	AT2G04630.1	21798944
AT5G63310.1	PGSC0003DMT400077272	AT3G45640.1	12506203
AT5G63310.1	PGSC0003DMT400060448	AT3G55150.1	21798944
AT5G63310.1	PGSC0003DMT400028840	AT5G01820.1	17785451
AT5G63310.1	PGSC0003DMT400056629	AT5G01820.1	17785451
AT5G63310.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT5G63310.1	PGSC0003DMT400047487	AT5G13810.1	21798944
AT5G63310.1	PGSC0003DMT400007475	AT5G35410.1	17785451
AT5G63310.1	PGSC0003DMT400039453	AT5G63310.1	17785451
AT5G63310.1	PGSC0003DMT400069352	AT5G63310.1	17785451

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G098300.2	Wheat	cytosol	67.48	63.95
PGSC0003DMT400080042	Potato	cytosol	53.99	59.46
Solyc03g110960.2.1	Tomato	plastid	82.21	57.51
KRH16591	Soybean	mitochondrion	68.1	56.92
PGSC0003DMT400069352	Potato	mitochondrion	77.91	56.7
KRH57193	Soybean	plastid	75.46	54.67
KRH03909	Soybean	plastid	75.46	54.19
EES16135	Sorghum	plastid	73.62	54.05
VIT_17s0000g10280.t01	Wine grape	plastid	76.07	53.91
TraesCS5D01G104600.2	Wheat	plastid	72.39	53.64
TraesCS5A01G092400.1	Wheat	plastid	72.39	53.39
Os12t0548300-01	Rice	plastid	71.78	53.18
GSMUA_AchrUn_...	Banana	plastid	76.07	52.99
AT5G63310.1	Thale cress	plastid	73.01	51.52
Bra038621.1-P	Field mustard	plastid	73.01	51.29
CDY41513	Canola	plastid	73.01	51.29
CDX84395	Canola	plastid	72.39	50.86
CDY48138	Canola	plastid	71.17	50.43
Zm00001d023833_P001	Maize	plastid	73.01	50.21
KRG89746	Soybean	plastid	66.26	48.21
HORVU5Hr1G024250.1	Barley	mitochondrion	73.01	47.98
PGSC0003DMT400014828	Potato	mitochondrion	49.08	34.48
PGSC0003DMT400031997	Potato	extracellular	50.31	34.45
PGSC0003DMT400011148	Potato	endoplasmic reticulum	31.9	30.23

Protein Annotations

KEGG:00230+2.7.4.6	KEGG:00240+2.7.4.6	KEGG:00983+2.7.4.6	Gene3D:3.30.70.141	MapMan:6.3.2.4	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004550	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139
GO:GO:0006165	GO:GO:0006183	GO:GO:0006228	GO:GO:0006241	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	InterPro:IPR036850
UniProt:M1B8B0	HAMAP:MF_00451	InterPro:NDK-like_dom	InterPro:NDK-like_dom_sf	InterPro:Nucleoside_diP_kinase	InterPro:Nucleoside_diP_kinase_AS
PFAM:PF00334	EnsemblPlantsGene:PGSC0003DMG400015254	PGSC:PGSC0003DMG400015254	EnsemblPlants:PGSC0003DMT400039453	PRINTS:PR01243	ScanProsite:PS00469
PANTHER:PTHR11349	PANTHER:PTHR11349:SF44	SMART:SM00562	SUPFAM:SSF54919	UniParc:UPI000294B081	SEG:seg

Description

Nucleoside diphosphate kinase 2, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400015254]

Coordinates

chr3:+:50555402..50557234

Molecular Weight (calculated)

17993.7 Da

IEP (calculated)

4.859

GRAVY (calculated)

-0.075

Length

163 amino acids

Sequence
(BLAST)

001: MEEVEETYIM IKPDGVQRGL VGEIISIFEK KGFKLTGLKL FQCPKELAEE HYKDLQSKSF FPKLIDYITS GPVVCMAWEG IGVVASARKL IGATNPLNAE
101: PGTIRGDLAV QTGRNVVHGS DSPENGKREI DDNTALRLHF GVITPSVEIV IGWLYLDAFS IQE

Best Arabidopsis Sequence Match ( AT5G63310.1 )
(BLAST)

001: MVGATVVSKW TPLCVASPPE RNSASLNPHC SPARVNFRTA LAAFRPQFRL FSRNSASRRR LRASSSAESG IFLPHLVASM EDVEETYIMV KPDGIQRGLV
101: GEIISRFEKK GFKLIGLKMF QCPKELAEEH YKDLSAKSFF PNLIEYITSG PVVCMAWEGV GVVASARKLI GKTDPLQAEP GTIRGDLAVQ TGRNIVHGSD
201: SPENGKREIG LWFKEGELCK WDSALATWLR E

Arabidopsis Description

NDPK2Nucleoside diphosphate kinase [Source:UniProtKB/TrEMBL;Acc:Q0WUG9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.