Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g010500.2.1 | Tomato | nucleus | 97.92 | 97.92 |
| VIT_12s0028g01210.t01 | Wine grape | nucleus | 80.56 | 82.27 |
| VIT_16s0100g00530.t01 | Wine grape | nucleus | 80.56 | 81.69 |
| GSMUA_Achr3P18200_001 | Banana | nucleus | 80.56 | 81.12 |
| GSMUA_Achr4P27190_001 | Banana | nucleus | 78.47 | 79.58 |
| Os07t0463100-01 | Rice | nucleus | 77.78 | 78.87 |
| Os03t0586600-01 | Rice | nucleus | 77.78 | 78.87 |
| Zm00001d033099_P001 | Maize | nucleus | 77.08 | 78.17 |
| Zm00001d013780_P001 | Maize | nucleus | 77.08 | 78.17 |
| AT2G04630.1 | Thale cress | nucleus | 77.78 | 77.78 |
| EER96335 | Sorghum | nucleus | 76.39 | 76.92 |
| KRG91449 | Soybean | nucleus | 75.69 | 76.76 |
| HORVU2Hr1G030940.1 | Barley | nucleus | 75.0 | 76.06 |
| TraesCS2B01G194500.1 | Wheat | nucleus | 75.0 | 76.06 |
| TraesCS2D01G175800.1 | Wheat | nucleus | 75.0 | 76.06 |
| CDY30836 | Canola | nucleus | 75.69 | 75.69 |
| CDY30291 | Canola | nucleus | 75.69 | 75.69 |
| CDY20025 | Canola | nucleus | 75.69 | 75.69 |
| CDY00134 | Canola | nucleus | 75.69 | 75.69 |
| Bra039057.1-P | Field mustard | nucleus | 75.69 | 75.69 |
| Bra025617.1-P | Field mustard | nucleus | 75.69 | 75.69 |
| AT5G51940.1 | Thale cress | nucleus | 75.69 | 75.69 |
| KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 72.92 | 71.43 |
| KRH35367 | Soybean | nucleus | 72.22 | 71.23 |
| Os08t0426000-00 | Rice | nucleus | 39.58 | 18.51 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | EntrezGene:102584130 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | InterPro:DNA-dir_RNA_polK_14-18kDa_CS |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005665 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016740 | InterPro:IPR012293 | UniProt:M1AHN9 | HAMAP:MF_00192 | PFAM:PF01192 | EnsemblPlantsGene:PGSC0003DMG400008922 |
| PGSC:PGSC0003DMG400008922 | EnsemblPlants:PGSC0003DMT400023048 | PIRSF:PIRSF000778 | PIRSF:PIRSF500154 | ScanProsite:PS01111 | PANTHER:PTHR10773 |
| PANTHER:PTHR10773:SF14 | InterPro:Pol_omega/K/RPB6 | InterPro:RNAP_RPB6_omega | InterPro:RPB6 | InterPro:RPB6/omega_like_sf | InterPro:RpoK/Rpb6 |
| SMART:SM01409 | SUPFAM:SSF63562 | UniParc:UPI0002954AFA | RefSeq:XP_006341053.1 | SEG:seg | : |
Description
DNA-directed RNA polymerase IIa [Source:PGSC_GENE;Acc:PGSC0003DMG400008922]
Coordinates
chr9:-:2046649..2049534
Molecular Weight (calculated)
16512.1 Da
IEP (calculated)
3.920
GRAVY (calculated)
-1.038
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDYDMDG GYVDEPMDPE PDEGAEIEED NGNNEDVPDP LMGEGEEKPE QQEPVERPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRERKI PFTIRRYLPD GSYEDWGVDE LIVEDSWKRQ VGGT
101: AMKELRERKI PFTIRRYLPD GSYEDWGVDE LIVEDSWKRQ VGGT
001: MADDDYNEVD DLGYEDEPAE PEIEEGVEED ADIKENDDVN VDPLETEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD MSYEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6BDNA-directed RNA polymerases II and V subunit 6B [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ96]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.