Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- nucleus 5
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d013780_P001 | Maize | nucleus | 92.25 | 92.25 |
Zm00001d033099_P001 | Maize | nucleus | 91.55 | 91.55 |
Os07t0463100-01 | Rice | nucleus | 90.85 | 90.85 |
GSMUA_Achr4P27190_001 | Banana | nucleus | 90.85 | 90.85 |
TraesCS2D01G175800.1 | Wheat | nucleus | 89.44 | 89.44 |
TraesCS2B01G194500.1 | Wheat | nucleus | 89.44 | 89.44 |
HORVU2Hr1G030940.1 | Barley | nucleus | 89.44 | 89.44 |
GSMUA_Achr3P18200_001 | Banana | nucleus | 89.44 | 88.81 |
VIT_12s0028g01210.t01 | Wine grape | nucleus | 84.51 | 85.11 |
VIT_16s0100g00530.t01 | Wine grape | nucleus | 84.51 | 84.51 |
KRG91449 | Soybean | nucleus | 81.69 | 81.69 |
KXG38092 | Sorghum | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 83.1 | 80.27 |
AT5G51940.1 | Thale cress | nucleus | 80.99 | 79.86 |
CDY20025 | Canola | nucleus | 79.58 | 78.47 |
CDY00134 | Canola | nucleus | 79.58 | 78.47 |
Bra039057.1-P | Field mustard | nucleus | 79.58 | 78.47 |
CDY30836 | Canola | nucleus | 78.87 | 77.78 |
PGSC0003DMT400023048 | Potato | nucleus | 78.87 | 77.78 |
CDY30291 | Canola | nucleus | 78.87 | 77.78 |
Bra025617.1-P | Field mustard | nucleus | 78.87 | 77.78 |
AT2G04630.1 | Thale cress | nucleus | 78.87 | 77.78 |
Solyc09g010500.2.1 | Tomato | nucleus | 78.17 | 77.08 |
KRH35367 | Soybean | nucleus | 76.76 | 74.66 |
Os08t0426000-00 | Rice | nucleus | 45.07 | 20.78 |
Protein Annotations
KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | MapMan:15.1.6.4 | Gene3D:3.90.940.10 | EntrezGene:4333343 | EntrezGene:4343168 |
ProteinID:AAT76334.1 | ProteinID:ABF97353.1 | EMBL:AK070943 | EMBL:AK121807 | ProteinID:BAC07023.1 | ProteinID:BAF12484.1 |
ProteinID:BAF21496.1 | ProteinID:BAS85098.1 | ProteinID:BAT01380.1 | InterPro:DNA-dir_RNA_polK_14-18kDa_CS | ProteinID:EAZ27633.1 | GO:GO:0001054 |
GO:GO:0001055 | GO:GO:0001056 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0005654 | GO:GO:0005665 | GO:GO:0005666 | GO:GO:0005730 | GO:GO:0005736 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006360 | GO:GO:0006366 | GO:GO:0006383 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | InterPro:IPR012293 | HAMAP:MF_00192 | EnsemblPlantsGene:Os03g0586600 |
EnsemblPlants:Os03t0586600-01 | PFAM:PF01192 | PIRSF:PIRSF000778 | PIRSF:PIRSF500154 | ScanProsite:PS01111 | PANTHER:PTHR10773 |
PANTHER:PTHR10773:SF14 | InterPro:Pol_omega/K/RPB6 | UniProt:Q6F2V1 | InterPro:RNAP_RPB6_omega | InterPro:RPB6 | InterPro:RPB6/omega_like_sf |
InterPro:RpoK/Rpb6 | SMART:SM01409 | SUPFAM:SSF63562 | UniParc:UPI00003E1FEB | RefSeq:XP_015631727.1 | RefSeq:XP_015644995.1 |
SEG:seg | : | : | : | : | : |
Description
Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POLYPEPTIDE(RPABC6). (Os03t0586600-01)
Coordinates
chr3:-:21637320..21641223
Molecular Weight (calculated)
16302.8 Da
IEP (calculated)
3.974
GRAVY (calculated)
-1.115
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MADDDYNDMD MGYEDEPPEP EIEEGAEEEP ENNEDGPDEV VGAEAEDKEQ EKTQRPRKTS KYMTKYERAR ILGTRALQIS MNAPVMVELE GETDPLEIAM
101: KELRARKIPF TIRRYLPDGS YEDWGVDELI VEDSWKRQVG GG
101: KELRARKIPF TIRRYLPDGS YEDWGVDELI VEDSWKRQVG GG
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.