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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 1
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • nucleus 5
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d013780_P001 Maize nucleus 92.25 92.25
Zm00001d033099_P001 Maize nucleus 91.55 91.55
Os07t0463100-01 Rice nucleus 90.85 90.85
GSMUA_Achr4P27190_001 Banana nucleus 90.85 90.85
TraesCS2D01G175800.1 Wheat nucleus 89.44 89.44
TraesCS2B01G194500.1 Wheat nucleus 89.44 89.44
HORVU2Hr1G030940.1 Barley nucleus 89.44 89.44
GSMUA_Achr3P18200_001 Banana nucleus 89.44 88.81
VIT_12s0028g01210.t01 Wine grape nucleus 84.51 85.11
VIT_16s0100g00530.t01 Wine grape nucleus 84.51 84.51
KRG91449 Soybean nucleus 81.69 81.69
KXG38092 Sorghum endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 83.1 80.27
AT5G51940.1 Thale cress nucleus 80.99 79.86
CDY20025 Canola nucleus 79.58 78.47
CDY00134 Canola nucleus 79.58 78.47
Bra039057.1-P Field mustard nucleus 79.58 78.47
CDY30836 Canola nucleus 78.87 77.78
PGSC0003DMT400023048 Potato nucleus 78.87 77.78
CDY30291 Canola nucleus 78.87 77.78
Bra025617.1-P Field mustard nucleus 78.87 77.78
AT2G04630.1 Thale cress nucleus 78.87 77.78
Solyc09g010500.2.1 Tomato nucleus 78.17 77.08
KRH35367 Soybean nucleus 76.76 74.66
Os08t0426000-00 Rice nucleus 45.07 20.78
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6MapMan:15.1.6.4Gene3D:3.90.940.10EntrezGene:4333343EntrezGene:4343168
ProteinID:AAT76334.1ProteinID:ABF97353.1EMBL:AK070943EMBL:AK121807ProteinID:BAC07023.1ProteinID:BAF12484.1
ProteinID:BAF21496.1ProteinID:BAS85098.1ProteinID:BAT01380.1InterPro:DNA-dir_RNA_polK_14-18kDa_CSProteinID:EAZ27633.1GO:GO:0001054
GO:GO:0001055GO:GO:0001056GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824
GO:GO:0003899GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0005654GO:GO:0005665GO:GO:0005666GO:GO:0005730GO:GO:0005736GO:GO:0006139
GO:GO:0006351GO:GO:0006360GO:GO:0006366GO:GO:0006383GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016740InterPro:IPR012293HAMAP:MF_00192EnsemblPlantsGene:Os03g0586600
EnsemblPlants:Os03t0586600-01PFAM:PF01192PIRSF:PIRSF000778PIRSF:PIRSF500154ScanProsite:PS01111PANTHER:PTHR10773
PANTHER:PTHR10773:SF14InterPro:Pol_omega/K/RPB6UniProt:Q6F2V1InterPro:RNAP_RPB6_omegaInterPro:RPB6InterPro:RPB6/omega_like_sf
InterPro:RpoK/Rpb6SMART:SM01409SUPFAM:SSF63562UniParc:UPI00003E1FEBRefSeq:XP_015631727.1RefSeq:XP_015644995.1
SEG:seg:::::
Description
Similar to DNA-DIRECTED RNA POLYMERASES I, II, AND III 15 KD POLYPEPTIDE(RPABC6). (Os03t0586600-01)
Coordinates
chr3:-:21637320..21641223
Molecular Weight (calculated)
16302.8 Da
IEP (calculated)
3.974
GRAVY (calculated)
-1.115
Length
142 amino acids
Sequence
(BLAST)
001: MADDDYNDMD MGYEDEPPEP EIEEGAEEEP ENNEDGPDEV VGAEAEDKEQ EKTQRPRKTS KYMTKYERAR ILGTRALQIS MNAPVMVELE GETDPLEIAM
101: KELRARKIPF TIRRYLPDGS YEDWGVDELI VEDSWKRQVG GG
Best Arabidopsis Sequence Match ( AT5G51940.1 )
(BLAST)
001: MADEDYNDVD DLGYEDEPAE PEIEEGVEED VEMKENDDVN GEPIEAEDKV ETEPVQRPRK TSKFMTKYER ARILGTRALQ ISMNAPVMVE LEGETDPLEI
101: AMKELRQRKI PFTIRRYLPD GSFEEWGVDE LIVEDSWKRQ VGGD
Arabidopsis Description
NRPB6ANRPE6A [Source:UniProtKB/TrEMBL;Acc:A0A178UA32]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.