Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018530_P001 | Maize | plastid | 72.46 | 82.61 |
| EES07800 | Sorghum | plastid | 79.66 | 77.37 |
| TraesCS6D01G397000.1 | Wheat | mitochondrion | 59.75 | 71.57 |
| TraesCS6A01G412800.1 | Wheat | mitochondrion | 59.32 | 70.71 |
| TraesCS6B01G462100.1 | Wheat | mitochondrion | 58.9 | 70.2 |
| HORVU6Hr1G093960.1 | Barley | cytosol, peroxisome | 78.81 | 69.66 |
| Os03t0422702-00 | Rice | cytosol, plastid | 35.17 | 65.87 |
| CDY40752 | Canola | cytosol | 46.61 | 62.15 |
| CDX87179 | Canola | nucleus | 55.93 | 61.4 |
| Bra026506.1-P | Field mustard | cytosol, mitochondrion, nucleus | 55.93 | 61.11 |
| CDY16842 | Canola | nucleus | 55.51 | 60.93 |
| CDX81094 | Canola | nucleus | 46.19 | 60.56 |
| CDX78335 | Canola | nucleus | 44.92 | 60.23 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 60.17 | 58.2 |
| VIT_10s0042g00170.t01 | Wine grape | nucleus | 61.44 | 56.86 |
| KRH40904 | Soybean | nucleus | 57.2 | 56.49 |
| KRG89108 | Soybean | nucleus, plastid | 55.51 | 56.47 |
| CDY44770 | Canola | cytosol | 53.81 | 56.44 |
| KRH40902 | Soybean | nucleus | 57.2 | 56.25 |
| Bra029366.1-P | Field mustard | cytosol | 41.95 | 56.25 |
| KRH36141 | Soybean | nucleus | 57.63 | 55.28 |
| Bra028662.1-P | Field mustard | nucleus | 53.39 | 55.02 |
| Solyc04g009180.1.1 | Tomato | nucleus | 61.86 | 54.89 |
| CDY45760 | Canola | nucleus | 55.93 | 54.55 |
| Bra009667.1-P | Field mustard | nucleus | 57.63 | 54.4 |
| Bra009338.1-P | Field mustard | nucleus | 54.24 | 54.24 |
| CDY46951 | Canola | nucleus | 52.54 | 53.91 |
| Bra005984.1-P | Field mustard | nucleus | 53.39 | 53.85 |
| CDY40799 | Canola | nucleus | 52.12 | 53.48 |
| AT5G08330.1 | Thale cress | nucleus | 53.81 | 53.14 |
| CDY21536 | Canola | nucleus | 52.97 | 52.97 |
| CDX88010 | Canola | nucleus | 56.78 | 52.96 |
| KRG90619 | Soybean | nucleus | 54.24 | 52.89 |
| Solyc01g008230.2.1 | Tomato | nucleus | 55.08 | 52.21 |
| AT5G23280.1 | Thale cress | nucleus | 54.66 | 51.6 |
| Os02t0635800-01 | Rice | nucleus | 42.37 | 47.39 |
| Os04t0526000-01 | Rice | plastid | 41.1 | 47.09 |
| Os04t0542302-00 | Rice | cytosol, mitochondrion, nucleus | 28.81 | 35.79 |
| Os04t0194600-01 | Rice | plastid | 26.27 | 35.23 |
| PGSC0003DMT400042166 | Potato | cytosol | 55.51 | 29.24 |
| Os12t0173300-00 | Rice | nucleus | 42.8 | 24.16 |
| Os01t0924400-01 | Rice | nucleus | 30.51 | 22.71 |
| Os11t0175700-00 | Rice | nucleus, plastid | 38.14 | 22.17 |
| Os06t0226700-01 | Rice | nucleus | 35.59 | 21.71 |
| Os08t0544800-01 | Rice | nucleus | 33.47 | 21.18 |
| Os02t0747400-01 | Rice | nucleus | 33.9 | 19.51 |
| Os09t0521300-00 | Rice | nucleus | 29.66 | 18.37 |
Protein Annotations
| MapMan:15.5.19 | MapMan:27.1.5.3 | EntrezGene:9272106 | ProteinID:BAD23070.1 | ProteinID:BAH91947.1 | ProteinID:BAS81719.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR017887 | EnsemblPlantsGene:Os02g0828566 | EnsemblPlants:Os02t0828566-01 |
| PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF7 | UniProt:Q6K7P2 | InterPro:TF_TCP_subgr |
| InterPro:Transcription_factor_TCP | UniParc:UPI00003B052B | RefSeq:XP_015627477.1 | SEG:seg | : | : |
Description
Transcription factor, TCP domain containing protein. (Os02t0828566-01)
Coordinates
chr2:-:35608987..35610667
Molecular Weight (calculated)
24166.5 Da
IEP (calculated)
10.762
GRAVY (calculated)
-0.310
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRPDGGGG GGGAPDKQLV PASNANGTAL AVRKPPSKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS
101: FSTSSPSSLR SNSTSNSNDL LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV AAAAAPAMPG EASAARVGNY
201: LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR
101: FSTSSPSSLR SNSTSNSNDL LLPRAAPFIL GKRLRAADDH TTSPAPAPDA TAPTQAFWAL PARADFGQLW SFAAAPEMMV AAAAAPAMPG EASAARVGNY
201: LPMAQGNLNL LASFSGGPGG AGATAATGRP EEESAR
001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR
Arabidopsis Description
TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.