CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40904	Soybean	nucleus	99.58	100.0
KRG89108	Soybean	nucleus, plastid	87.5	90.52
KRH36141	Soybean	nucleus	75.0	73.17
KRG90619	Soybean	nucleus	70.0	69.42
Os03t0422702-00	Rice	cytosol, plastid	30.83	58.73
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	58.75	57.79
Os02t0828566-01	Rice	nucleus	56.25	57.2
Solyc01g008230.2.1	Tomato	nucleus	58.75	56.63
Zm00001d018530_P001	Maize	plastid	48.75	56.52
TraesCS6D01G397000.1	Wheat	mitochondrion	45.42	55.33
Solyc04g009180.1.1	Tomato	nucleus	61.25	55.26
TraesCS6B01G462100.1	Wheat	mitochondrion	45.0	54.55
TraesCS6A01G412800.1	Wheat	mitochondrion	45.0	54.55
EES07800	Sorghum	plastid	53.75	53.09
HORVU6Hr1G093960.1	Barley	cytosol, peroxisome	55.0	49.44
KRH30615	Soybean	cytosol	23.75	36.54
KRH32533	Soybean	plastid	25.42	32.11
KRH19921	Soybean	plastid	23.33	30.27
PGSC0003DMT400042166	Potato	cytosol	56.25	30.13
KRG99108	Soybean	nucleus	29.58	26.01
KRH45889	Soybean	nucleus	29.58	24.83
KRH49755	Soybean	nucleus	20.42	24.75
KRH48289	Soybean	nucleus	33.75	24.18
KRH65181	Soybean	nucleus	33.33	23.81
KRH06094	Soybean	plastid	35.42	23.55
KRH35393	Soybean	nucleus	29.58	22.83
KRG94577	Soybean	nucleus	30.83	22.42
KRG91429	Soybean	nucleus	30.42	22.39
KRH03994	Soybean	nucleus	31.67	22.35
KRH57263	Soybean	nucleus	31.25	21.68
KRH06910	Soybean	nucleus	30.83	21.45
KRH63357	Soybean	nucleus	35.0	21.11
KRH54542	Soybean	nucleus	35.42	20.83
KRH56919	Soybean	nucleus	35.83	20.67
KRH03466	Soybean	nucleus	35.42	20.58
KRH26343	Soybean	nucleus, plastid	36.67	20.28
KRH70699	Soybean	nucleus	35.0	19.81
KRH74835	Soybean	nucleus	31.67	19.74

Protein Annotations

EntrezGene:100786264	MapMan:15.5.19	MapMan:27.1.5.3	EMBL:ACUP02006069	EnsemblPlantsGene:GLYMA_09G284300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR017887	UniProt:K7LGM5	EnsemblPlants:KRH40902	ProteinID:KRH40902
ProteinID:KRH40902.1	PFAM:PF03634	PFscan:PS51369	PANTHER:PTHR31072	PANTHER:PTHR31072:SF73	InterPro:TF_TCP_subgr
InterPro:Transcription_factor_TCP	UniParc:UPI000233902C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:49956245..49959143

Molecular Weight (calculated)

25779.2 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.572

Length

240 amino acids

Sequence
(BLAST)

001: MSNSDGATNA VPPNDANNNT IVEYQQRTTT TTTAAAAALA VKKPPSKDRH SKVDGRGRRI RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA
101: TGSGTTPASF STVSDHKPLL PPPTPFILGK RIRPDDDSAA KDDAVSLVAP PTPPALWALP PRPDFGQVWS FAAAPELVSV SPQNSMFHHH HQHHQQQQQQ
201: AAMGEASAAR LGNYLPGHLN LLASLSGGHG NSGRRDDEPR

Best Arabidopsis Sequence Match ( AT5G23280.1 )
(BLAST)

001: MSINNNNNNN NNNNDGLMIS SNGALIEQQP SVVVKKPPAK DRHSKVDGRG RRIRMPIICA ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP
101: ASFSTASVSI RGATNSTSLD HKPTSLLGGT SPFILGKRVR ADEDSNNSHN HSSVGKDETF TTTPAGFWAV PARPDFGQVW SFAGAPQEMF LQQQHHHQQP
201: LFVHQQQQQQ AAMGEASAAR VGNYLPGHLN LLASLSGGSP GSDRREEDPR

Arabidopsis Description

TCP7Transcription factor TCP7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.